PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15677.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family G2-like
Protein Properties Length: 367aa    MW: 41286.3 Da    PI: 8.2878
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15677.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.8e-3279132255
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                prlrWtp+LH rFv+ave+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+
  PK15677.1  79 PRLRWTPDLHLRFVHAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 132
                8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.52175135IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-3075133IPR009057Homeodomain-like
SuperFamilySSF466899.14E-1577133IPR009057Homeodomain-like
TIGRFAMsTIGR015579.0E-2379134IPR006447Myb domain, plants
PfamPF002491.4E-980131IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
SISSSSSSGN DSEYSKTRLE YEEDEDEDHV YQSGEENKAN INGGLSSSNS TVEEEDNNDN  60
NKVNKSSSSV RPYVRSKMPR LRWTPDLHLR FVHAVERLGG QERATPKLVL QLMNIKGLSI  120
AHVKSHLQMY RSKKIDDAGQ VIGSHDQYHH HRHLVECGDR NIYNFSQLPM LQGYKQISHS  180
SSFRYGFGDP SWISTTSSFG NLRQYSRAGF YASSEAERKN ILAINNTNNA CNFIPSKNYN  240
ISSTISSIIN NHQHSSSWRN KAHNNKLIIK DIIDDHSSSL SPLIDQNSIA HLQVNKPKEL  300
TNFLTSSNNN VTHSDLVIST TTTSTSSMKR KASSDSNDLD LSLRLTTTTN TTHHNNAIVE  360
IHDHNKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-1880134458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-1880134458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-1880134357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-1880134357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-1880134357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-1880134357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-1880134458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-1880134458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-1880134458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-1880134458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-1880134458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-1880134458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092813.16e-93two-component response regulator ORR22
TrEMBLW9R2E61e-91W9R2E6_9ROSA; Putative Myb family transcription factor
STRINGXP_010092813.12e-92(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.17e-54G2-like family protein