PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15637.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 411aa    MW: 45871.7 Da    PI: 5.3425
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15637.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS155.64.3e-481904072209
       GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgd...........pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                +e L+++A++++s+dl+laq +L rl+++ +s++ +           p+qR+a yf+eAL++ l++     ++  + + +s+ + ++++ a+k+fs++sP
  PK15637.1 190 IEDLIRVADCFDSDDLQLAQVILDRLNNRvRSSNINnnkgvqqqggrPFQRAAIYFKEALESILSG-----SNRTTGRLSSWAEIVQTIRAHKAFSDISP 284
                678************************99644443446788888888*******************.....55556666677779*************** PP

       GRAS  90 ilkfshltaNqaIleavegeerv.HiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                i+ f+++t+Nqa+lea+ g++ + H+iDfdi+  +++++L+++La+++     ++p lR+T+v+++e   + e + ++e+L++f + l+++f++++++++
  PK15637.1 285 IPMFTQFTTNQALLEALGGSTFIiHVIDFDIGLAGHYASLMKELAQKSeslrVNAPVLRVTAVVPEE--YAVESRLIRENLTQFSQDLKIRFQIDFVLVR 382
                ********************8766***********************9666666***********66..99999************************** PP

       GRAS 185 rledleleeLrvkpgEalaVnlvlq 209
                 +e+l++++ ++++gE++aV ++ +
  PK15637.1 383 VFEALSFKAVNFREGEKIAVIFSSA 407
                ********************88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.707163411IPR005202Transcription factor GRAS
PfamPF035141.5E-45190407IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
NIPNNNIVFH QIIPNLCYEP TSVLDLGRSP SPVLAAPGGG GGKPANNNNK VVINNSNNNN  60
NNNSDDVALS TQTTNDHNTL EWPVDDQVLH NLDWDNIMRE LGLHDDSVPS PFKTASTNTT  120
TTNATTHHQI ITADNHDHPQ PFDPTIATTT DHHFNLFSDN HNLNLFQVSP DFQNNNNNNN  180
NNWNIGFDFI EDLIRVADCF DSDDLQLAQV ILDRLNNRVR SSNINNNKGV QQQGGRPFQR  240
AAIYFKEALE SILSGSNRTT GRLSSWAEIV QTIRAHKAFS DISPIPMFTQ FTTNQALLEA  300
LGGSTFIIHV IDFDIGLAGH YASLMKELAQ KSESLRVNAP VLRVTAVVPE EYAVESRLIR  360
ENLTQFSQDL KIRFQIDFVL VRVFEALSFK AVNFREGEKI AVIFSSAVLR X
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099836.11e-147scarecrow-like protein 15
TrEMBLA0A2P5FXR71e-152A0A2P5FXR7_TREOI; GRAS transcription factor
STRINGXP_010099836.11e-147(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.13e-86GRAS family protein