PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK15577.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

MYB_related

Protein Properties

Length: 221aa MW: 24819 Da PI: 6.5057

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK15577.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34	6.7e-11	3	31	17	47
HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqky 47 lG++ W++Ia++++ gRt++++k++w+++ PK15577.1 3 SVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 31 569*.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.352	1	36	IPR017930	Myb domain
SuperFamily	SSF46689	2.65E-9	2	43	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-15	2	33	IPR009057	Homeodomain-like
Pfam	PF00249	4.9E-9	3	31	IPR001005	SANT/Myb domain
CDD	cd00167	1.66E-7	7	32	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
XHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLKMG IDPVTHTPRL DLLELSSLLN 60 STLYNSHLSY LINNYNNNHN NNNNLLGNMG PPLVNNENLL SLASALLSSS NQQNIVPQNI 120 VQNQNQIYDN NDDHSQYCGQ LPFLSETPFM QSKMEQFPQR TIHDDQSQQN HDLYHISNQG 180 LATGVESSTI TTTVAPMELI DHNGYISARS SSSSTTSLIL X

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269\|PubMed:19517001, ECO:0000305\|PubMed:12857823}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269\|PubMed:12857823, ECO:0000269\|PubMed:19517001, ECO:0000269\|PubMed:8980549}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023892688.1	4e-44	transcription factor MYB41-like
Swissprot	Q9LDR8	9e-38	MY102_ARATH; Transcription factor MYB102
TrEMBL	A0A2P5F3L5	6e-50	A0A2P5F3L5_TREOI; MYB transcription factor
STRING	VIT_19s0014g03820.t01	5e-39	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16895	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05100.1	2e-28	myb domain protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615] Zhu L,Guo J,Ma Z,Wang J,Zhou C Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis. Biomolecules, 2019. [PMID:29880735]