PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15571.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HD-ZIP
Protein Properties Length: 218aa    MW: 24804.3 Da    PI: 9.0313
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15571.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.46e-1962116256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 ++++f+++q++ Le++Fe++  +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  PK15571.1  62 NNKRRFSDDQIKSLESMFENETRLEPKKKLQLASELGLQPRQVAIWFQNKRARWK 116
                56789*************************************************9 PP
2HD-ZIP_I/II117.86.1e-3863154293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +krr+s++q+k+LE++Fe+e++Lep++K +la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L ++y++l+++ ++L+ke++ L+ +l++
    PK15571.1  63 NKRRFSDDQIKSLESMFENETRLEPKKKLQLASELGLQPRQVAIWFQNKRARWKSKQLERDYSILLANYKNLASRFDALKKEKQGLALQLQK 154
                  79************************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-1939120IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-2053118IPR009057Homeodomain-like
PROSITE profilePS5007118.10758118IPR001356Homeobox domain
SMARTSM003893.4E-1760122IPR001356Homeobox domain
PfamPF000462.1E-1662116IPR001356Homeobox domain
CDDcd000861.04E-1467119No hitNo description
PRINTSPR000318.9E-68998IPR000047Helix-turn-helix motif
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PRINTSPR000318.9E-698114IPR000047Helix-turn-helix motif
PfamPF021832.5E-14118158IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MFEDQNNIHG EYSYCPTSDR FDHNNSNINI HESSFSNSSS TSSSIGAGVQ VPAGNRKKKS  60
KNNKRRFSDD QIKSLESMFE NETRLEPKKK LQLASELGLQ PRQVAIWFQN KRARWKSKQL  120
ERDYSILLAN YKNLASRFDA LKKEKQGLAL QLQKLSGDLM QSSKDKDKDN DKVDKDSDNG  180
KVKTETDQSE VMKPSLSSLE RTEHVLGVLS SDDDSCMX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028206109.11e-62homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A2P5FIG73e-84A0A2P5FIG7_TREOI; Octamer-binding transcription factor
STRINGGLYMA16G02390.17e-62(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-43homeobox 7