PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15531.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 447aa    MW: 48909.1 Da    PI: 8.5667
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15531.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.41.7e-15242287555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+Lq
  PK15531.1 242 HNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIHYLKQLQ 287
                9************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.358237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-19240309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-13242287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-18242302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-16242291No hitNo description
SMARTSM003535.5E-17243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MSHYVVPKWN LRHQRQEQVE GEEGNRSSHV QNHSSCSNST HLVPIRSRFN NKVKELTWEN  60
GQLAMHGLDG LLPSGPTKPT WGTNCETLES IVHQATTCNN QVQDPYVTYH GQTPATITFE  120
TGATSSGKRV ENAFMAPPVM RKRNQSNSNN EGKNLSSNNC SIQEEQGGPS ACASASTTFC  180
KESDTTLMTW ASFESPQSLK NKSTDEDSAC HDGMGNQDED QETKGESGRS NSTRRSRAAA  240
IHNQSERRRR DRINQKMKAL QKLVPNASKT DKASMLDEVI HYLKQLQTQV QVMSSLRNMS  300
PQMVMSLGMQ QQLQMSMLAR MGMGMGMGMG MGMGMGMGML DMSSMARPSP QSLSSVIHPT  360
AATTTGSTFV PPPFMVPSIL MAQGAKPGPA DTSTSSSVSL PDPYCALMAQ PVNMELYNKM  420
AAALYGQQVN QTRQAAKSPK FSTHVQD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245250ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00571DAPTransfer from AT5G61270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571977.11e-171transcription factor PIF7 isoform X1
TrEMBLA0A2P5FW110.0A0A2P5FW11_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010106642.11e-172(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61270.12e-35phytochrome-interacting factor7