PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK15478.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB | ||||||||
Protein Properties | Length: 554aa MW: 61479.9 Da PI: 4.8634 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 1e-17 | 39 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ede+l +v+q+G g+W+++ ++ g+ R++k+c++rw ++l PK15478.1 39 KGPWTANEDEILRTYVQQHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 86 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 47.1 | 5.7e-15 | 92 | 135 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T +E++l++++++q G++ W++ a++++ gRt++++k++w++ PK15478.1 92 KGAFTNDEEDLIINLHAQIGNK-WARMAARLP-GRTDNEIKNYWNT 135 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.382 | 34 | 86 | IPR017930 | Myb domain |
SMART | SM00717 | 5.7E-15 | 38 | 88 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.24E-29 | 38 | 133 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-15 | 39 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-24 | 40 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.15E-11 | 41 | 86 | No hit | No description |
PROSITE profile | PS51294 | 23.2 | 87 | 141 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-14 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-14 | 92 | 135 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 94 | 141 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.79E-10 | 94 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MSRSTNESED GQISHYQSDS SLIDENNGGS TSGGHVLKKG PWTANEDEIL RTYVQQHGEG 60 NWNAVQKHSG LSRCGKSCRL RWANHLRPDL KKGAFTNDEE DLIINLHAQI GNKWARMAAR 120 LPGRTDNEIK NYWNTRVKRR LRAGLPLYPT DLCLQARQEN QGQNTAGINC GDKGQSDHMN 180 AKNHIPPVIF NGLNGNPDGL QYFSELPTMS MNSMPMKGIV HPQYYSYMTL NRKKRLRETS 240 DDFPDSSGCV QNGYPLFDQC ENVNPGKDAN PWPTFQEDLD PNKILLPYDV TQGSHALSNG 300 NSSASNPIYG NVKLELPSLQ YTETDLGAWA TSAPPPLLDS VDSFMQSPPS VNVFEPECST 360 PHNSGLLEDL LHESKNLSSG KRHLSEKSPN SSSITPCDVV DNNPLNFCET EWEDYRESPF 420 CHSATSLLNE PITTSGSSLD EPLPLNSFPG NTVKPEPFDA DSVAAKEIEP IRQINFNHFD 480 RPDSLPLSDW FDQTTGYVDQ TLVNNTLASV LGGESTNDYK YMAASTASLS QDMMGFGHYS 540 WNAMPSVCQL SEHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-29 | 36 | 141 | 1 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-29 | 36 | 141 | 1 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 141 | RVKRRLR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00348 | DAP | Transfer from AT3G11440 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM456085 | 7e-36 | AM456085.1 Vitis vinifera contig VV78X211164.14, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015876153.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_015876154.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_015876155.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_024927801.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_024927802.1 | 0.0 | transcription factor MYB33 | ||||
TrEMBL | A0A2P5EMK2 | 0.0 | A0A2P5EMK2_TREOI; MYB transcription factor | ||||
STRING | XP_010091315.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 1e-106 | myb domain protein 65 |