PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK15417.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | Trihelix | ||||||||
Protein Properties | Length: 493aa MW: 55566.5 Da PI: 6.3505 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 75.8 | 7e-24 | 96 | 196 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+ +v++Li a+ +++++ ++++ +kk++W+ vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ +++d + PK15417.1 96 KWTDTMVRLLIMAVYYIGDENSSEAidptnkkkptggllQKKGKWKTVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACKVVENQSLLDTM 195 7**************999888876556667788999999**********************************************559*********999 PP trihelix 86 e 86 + PK15417.1 196 D 196 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.9E-22 | 94 | 221 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MGAGMLGLEI PLQQQQQNPS NTQNPHLLSH SQMVAYGHHD SDHHPQAQPS VKHGYPYAPK 60 SKQIPPTLSD EDDLGFGADD NSGDGKRKMS PWQRMKWTDT MVRLLIMAVY YIGDENSSEA 120 IDPTNKKKPT GGLLQKKGKW KTVSRAMMEK GFYVSPQQCE DKFNDLNKRY KRVNDILGKG 180 TACKVVENQS LLDTMDLAPK IKEEVRKLLN SKHLFFREMC AYHNSCSHAG ATTTNGVASG 240 ANHSSELATS EPSSNVQPNQ QNQQQQQQQQ RCFHATDNSH VVSNLSRPGT EHGSKVVKAS 300 GSGGEDEEDD DEDDDDSDDY DDDEDDDEAE GGSRGPIGHG HEDIDDVSHV RLRKRPRKGV 360 LSESSQLIQQ LSCEILGVIQ DGSKSSWEKK QWLKSRMIQL EEQQVNFQCE AFELEKQRLK 420 WVKFSSKKER EMEKAKFENE KRRLENERMV LLIRQKELEV LELYHRSQHQ QQQHSSNKRS 480 GGGGGGDPSS ITG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 350 | 356 | RLRKRPR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015898596.1 | 0.0 | uncharacterized protein LOC107432054 | ||||
TrEMBL | A0A2P5FVN4 | 0.0 | A0A2P5FVN4_TREOI; Sequence-specific DNA binding transcription factor | ||||
STRING | XP_004303047.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4820 | 34 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10040.1 | 5e-75 | sequence-specific DNA binding transcription factors |