PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK15395.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRAS | ||||||||
Protein Properties | Length: 57aa MW: 6176.81 Da PI: 5.6982 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 35.5 | 1.4e-11 | 1 | 56 | 10 | 65 |
GRAS 10 eavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalp 65 eav+ +d a +lL +++ + s +g+ qRl++yf +AL+arl++ ++ely al+ PK15395.1 1 EAVAVNDRDTAAELLLQIRRNTSISGNGSQRLTHYFGNALEARLNGIGNELYTALS 56 589999**********************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 4.9E-9 | 1 | 56 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 11.137 | 1 | 57 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 57 aa Download sequence Send to blast |
EAVAVNDRDT AAELLLQIRR NTSISGNGSQ RLTHYFGNAL EARLNGIGNE LYTALST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006409947.1 | 5e-17 | scarecrow-like protein 33 | ||||
Refseq | XP_024016820.1 | 5e-17 | scarecrow-like protein 33 | ||||
Swissprot | P0C883 | 1e-17 | SCL33_ARATH; Scarecrow-like protein 33 | ||||
TrEMBL | A0A2P5DQI7 | 2e-21 | A0A2P5DQI7_PARAD; GRAS transcription factor | ||||
STRING | XP_006409947.1 | 2e-16 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 6e-20 | GRAS family protein |