PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15387.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 746aa    MW: 84023.3 Da    PI: 5.4106
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15387.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.18e-1113747432373
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                  lL++cA+avs++d ++a++lL+++++++sp gd +qRl + f+ AL+arl ++++e++++l +++ +    +  l+ ++++  + P+ k+s + aNq+
  PK15387.1 374 LALLISCAQAVSANDIRNANELLKKIRKHSSPFGDGTQRLGHLFADALEARLDGTGKEICDTLGATKLP---ADILLKTYHTYISANPYKKISIIFANQM 470
                579************************************************************999998...7889999********************* PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                I +a+e+++++HiiDf+i +G QWp ++q+L+ Rp+gpp+lRiTg++ p++g   ++++eetg+ Lak++e++gvpfe+n  +ak++e++++++L+++++
  PK15387.1 471 IFKAAEKATKLHIIDFGILYGYQWPVFIQSLSRRPGGPPKLRITGIEFPQHGfrPEKMVEETGSVLAKYCERFGVPFEYNG-IAKQWENVQIDDLKIDRN 569
                ***************************************************9*9***************************.7***************** PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                E+laVn+ ++  ++lde+++++s+rd+vL+l+++++P+++ ++  +  +n + F++rf e+l ++s+l+d  ++ l+re++ r + E+ +lgrei+nv+a
  PK15387.1 570 EVLAVNCLHRFRSILDETAAVRSPRDAVLNLIRKIKPNIFAHAVFNGAYNVPFFVTRFRETLFFFSSLLDGADTILAREDQLRLSFEKYILGREIMNVIA 669
                **************************************************************************************************** PP

       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                ceg+er+er et+++W+ r+++aGF+++pl+ + +k +k+++++ + + + vee+s+++++gWk+r L + S+W
  PK15387.1 670 CEGSERVERPETYKQWQLRITRAGFRQLPLDMELVKRMKSIVKHGYHRDFVVEEDSNWMLQGWKGRILCASSCW 743
                ********************************************99999************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.599347724IPR005202Transcription factor GRAS
PfamPF035142.8E-108374743IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
XIDLVTGKSV KLLICIDGNV AQLSNLSFIV SLDQYPDSIN DIRASEIIMD YSFDPSMSSE  60
RGSLVNDGEF SCTALDYINQ MLMDEDMEAK PSLFYDPSAL IATEKSFYEA LGEKYPPSEY  120
EHEQPQYRDQ NFQSSDDSFT TSVSDCSEDI SSSSCSSTGN STHSVGTSVD SVAHRPSAKF  180
ENQSTSDSSS QSSANSTYKI GTSLGELQNF LSENELMLQF KRGLEEGNKF LPKGNQLGFP  240
MENNKNMSPY TNEKVSNELV EVKKDKKREQ LHIRLTEKKK NHDREDTDLV DGRSNKQMAV  300
STDDTGLSEL FDKVLLFREE QEAPSGTSDE SYQNNEVDSS SRQQEGGSHG TTNSGKTASK  360
TKILNNDKEV VDLLALLISC AQAVSANDIR NANELLKKIR KHSSPFGDGT QRLGHLFADA  420
LEARLDGTGK EICDTLGATK LPADILLKTY HTYISANPYK KISIIFANQM IFKAAEKATK  480
LHIIDFGILY GYQWPVFIQS LSRRPGGPPK LRITGIEFPQ HGFRPEKMVE ETGSVLAKYC  540
ERFGVPFEYN GIAKQWENVQ IDDLKIDRNE VLAVNCLHRF RSILDETAAV RSPRDAVLNL  600
IRKIKPNIFA HAVFNGAYNV PFFVTRFRET LFFFSSLLDG ADTILAREDQ LRLSFEKYIL  660
GREIMNVIAC EGSERVERPE TYKQWQLRIT RAGFRQLPLD MELVKRMKSI VKHGYHRDFV  720
VEEDSNWMLQ GWKGRILCAS SCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-4538074525379Protein SCARECROW
5b3h_D2e-4538074525379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028133.10.0scarecrow-like protein 14 isoform X1
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2P5D6550.0A0A2P5D655_TREOI; GRAS transcription factor
STRINGXP_010106504.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]