PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK15387.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRAS | ||||||||
Protein Properties | Length: 746aa MW: 84023.3 Da PI: 5.4106 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 362.1 | 8e-111 | 374 | 743 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 lL++cA+avs++d ++a++lL+++++++sp gd +qRl + f+ AL+arl ++++e++++l +++ + + l+ ++++ + P+ k+s + aNq+ PK15387.1 374 LALLISCAQAVSANDIRNANELLKKIRKHSSPFGDGTQRLGHLFADALEARLDGTGKEICDTLGATKLP---ADILLKTYHTYISANPYKKISIIFANQM 470 579************************************************************999998...7889999********************* PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 I +a+e+++++HiiDf+i +G QWp ++q+L+ Rp+gpp+lRiTg++ p++g ++++eetg+ Lak++e++gvpfe+n +ak++e++++++L+++++ PK15387.1 471 IFKAAEKATKLHIIDFGILYGYQWPVFIQSLSRRPGGPPKLRITGIEFPQHGfrPEKMVEETGSVLAKYCERFGVPFEYNG-IAKQWENVQIDDLKIDRN 569 ***************************************************9*9***************************.7***************** PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 E+laVn+ ++ ++lde+++++s+rd+vL+l+++++P+++ ++ + +n + F++rf e+l ++s+l+d ++ l+re++ r + E+ +lgrei+nv+a PK15387.1 570 EVLAVNCLHRFRSILDETAAVRSPRDAVLNLIRKIKPNIFAHAVFNGAYNVPFFVTRFRETLFFFSSLLDGADTILAREDQLRLSFEKYILGREIMNVIA 669 **************************************************************************************************** PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ceg+er+er et+++W+ r+++aGF+++pl+ + +k +k+++++ + + + vee+s+++++gWk+r L + S+W PK15387.1 670 CEGSERVERPETYKQWQLRITRAGFRQLPLDMELVKRMKSIVKHGYHRDFVVEEDSNWMLQGWKGRILCASSCW 743 ********************************************99999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.599 | 347 | 724 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.8E-108 | 374 | 743 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 746 aa Download sequence Send to blast |
XIDLVTGKSV KLLICIDGNV AQLSNLSFIV SLDQYPDSIN DIRASEIIMD YSFDPSMSSE 60 RGSLVNDGEF SCTALDYINQ MLMDEDMEAK PSLFYDPSAL IATEKSFYEA LGEKYPPSEY 120 EHEQPQYRDQ NFQSSDDSFT TSVSDCSEDI SSSSCSSTGN STHSVGTSVD SVAHRPSAKF 180 ENQSTSDSSS QSSANSTYKI GTSLGELQNF LSENELMLQF KRGLEEGNKF LPKGNQLGFP 240 MENNKNMSPY TNEKVSNELV EVKKDKKREQ LHIRLTEKKK NHDREDTDLV DGRSNKQMAV 300 STDDTGLSEL FDKVLLFREE QEAPSGTSDE SYQNNEVDSS SRQQEGGSHG TTNSGKTASK 360 TKILNNDKEV VDLLALLISC AQAVSANDIR NANELLKKIR KHSSPFGDGT QRLGHLFADA 420 LEARLDGTGK EICDTLGATK LPADILLKTY HTYISANPYK KISIIFANQM IFKAAEKATK 480 LHIIDFGILY GYQWPVFIQS LSRRPGGPPK LRITGIEFPQ HGFRPEKMVE ETGSVLAKYC 540 ERFGVPFEYN GIAKQWENVQ IDDLKIDRNE VLAVNCLHRF RSILDETAAV RSPRDAVLNL 600 IRKIKPNIFA HAVFNGAYNV PFFVTRFRET LFFFSSLLDG ADTILAREDQ LRLSFEKYIL 660 GREIMNVIAC EGSERVERPE TYKQWQLRIT RAGFRQLPLD MELVKRMKSI VKHGYHRDFV 720 VEEDSNWMLQ GWKGRILCAS SCWVPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-45 | 380 | 745 | 25 | 379 | Protein SCARECROW |
5b3h_D | 2e-45 | 380 | 745 | 25 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024028133.1 | 0.0 | scarecrow-like protein 14 isoform X1 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A2P5D655 | 0.0 | A0A2P5D655_TREOI; GRAS transcription factor | ||||
STRING | XP_010106504.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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