 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PK15337.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
| Family | Dof | ||||||||
| Protein Properties | Length: 323aa MW: 35708.8 Da PI: 8.0694 | ||||||||
| Description | Dof family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-Dof | 127.6 | 3.6e-40 | 32 | 93 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
+e+alkcprCdstntkfCyynnysl+qPryfCkaCrryWtkGG+lrnvPvGgg+r+nk+sss
PK15337.1 32 PEQALKCPRCDSTNTKFCYYNNYSLTQPRYFCKACRRYWTKGGTLRNVPVGGGCRRNKRSSS 93
6899******************************************************9875 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| ProDom | PD007478 | 1.0E-29 | 30 | 90 | IPR003851 | Zinc finger, Dof-type |
| Pfam | PF02701 | 1.5E-33 | 34 | 90 | IPR003851 | Zinc finger, Dof-type |
| PROSITE profile | PS50884 | 29.516 | 36 | 90 | IPR003851 | Zinc finger, Dof-type |
| PROSITE pattern | PS01361 | 0 | 38 | 74 | IPR003851 | Zinc finger, Dof-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005730 | Cellular Component | nucleolus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 323 aa Download sequence Send to blast |
MSSSDSLGNM LVGSKQQSQH QDQRKQTSKP HPEQALKCPR CDSTNTKFCY YNNYSLTQPR 60 YFCKACRRYW TKGGTLRNVP VGGGCRRNKR SSSNNNNSSS SSTATSSATS SSKLIKPSHH 120 HNSLLLLPQQ LSVIGGSNSS SGYDSNDLSL AFARLQKQSS CGQLLGNFDH GYDHNHNNNE 180 LIGINNSNIG FLDALRNGFL DQSSHSNNNN NMFYGFGNGN EINGNVVVGN DDQNLGNHHH 240 HMSYNDHDHD DMMIKQELRS SSSSDHNNNK VLWGCPWQLN GSSSENNNQF HGGMAEIDHT 300 AGRESWNGLS SSWHGLLNTT PLM |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010104144.2 | 4e-89 | dof zinc finger protein DOF2.1 | ||||
| TrEMBL | A0A2P5CMS3 | 1e-103 | A0A2P5CMS3_PARAD; Zinc finger transcription factor | ||||
| STRING | XP_010104144.1 | 4e-84 | (Morus notabilis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF5026 | 30 | 51 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G60200.1 | 7e-37 | TARGET OF MONOPTEROS 6 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|