PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK15192.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 75aa MW: 9068.36 Da PI: 10.8424 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.9 | 9.9e-13 | 25 | 73 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +rW+ E++ l d+v+++G g+Wk+I + + Rt+ ++k++w++ PK15192.2 25 KRWSLLEEDTLRDGVNKYGRGNWKLILNSYSdifEERTEVDLKDKWRNM 73 69********************************9************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.711 | 19 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.57E-15 | 21 | 74 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-4 | 23 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-10 | 25 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-13 | 25 | 75 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 6.71E-17 | 25 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
XPKIKVVSPL KKYAPTKILK RRKVKRWSLL EEDTLRDGVN KYGRGNWKLI LNSYSDIFEE 60 RTEVDLKDKW RNMTR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 22 | KILKRRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024029310.1 | 4e-35 | uncharacterized protein LOC21393956 isoform X1 | ||||
Refseq | XP_024029311.1 | 4e-35 | uncharacterized protein LOC21393956 isoform X2 | ||||
Refseq | XP_024029312.1 | 3e-35 | uncharacterized protein LOC21393956 isoform X3 | ||||
Refseq | XP_024029313.1 | 5e-35 | uncharacterized protein LOC21393957 isoform X1 | ||||
Refseq | XP_024029314.1 | 4e-35 | uncharacterized protein LOC21393957 isoform X2 | ||||
TrEMBL | A0A2N9IDJ7 | 4e-33 | A0A2N9IDJ7_FAGSY; Uncharacterized protein | ||||
STRING | XP_009374383.1 | 3e-31 | (Pyrus x bretschneideri) | ||||
STRING | XP_008366280.1 | 2e-33 | (Malus domestica) | ||||
STRING | EMJ08291 | 3e-31 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2824 | 32 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58340.2 | 1e-14 | MYB_related family protein |