PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15192.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 534aa    MW: 60204.1 Da    PI: 5.9534
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15192.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74.3e-11484532247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +rW+  E++ l d+v+++G g+Wk+I +      + Rt+ ++k++w++ 
        PK15192.1 484 KRWSLLEEDTLRDGVNKYGRGNWKLILNSYSdifEERTEVDLKDKWRNM 532
                      59********************************9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.711478534IPR017930Myb domain
SMARTSM007174.0E-4482534IPR001005SANT/Myb domain
CDDcd116602.22E-18484534No hitNo description
Gene3DG3DSA:1.10.10.603.6E-11485534IPR009057Homeodomain-like
SuperFamilySSF466898.58E-14485533IPR009057Homeodomain-like
PfamPF002491.2E-8485532IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MDVSRWILEY LIRSPDNDRL PTRALSVLPI PNHDLRWKKI LLLRTIECDV SDALVTESIL  60
QNLELVEALD SRQEEGAATA IVESMKAAYC AVALECTVKF LVSGGGKPGE KYLNAIDRIW  120
RGRVCQLERS GKKSNLLTVD LKRCWDEVEK AVWDDGVCKK LLGMNTRNEA VRLVLEYLKE  180
AWALMGPSFV EWAAKLSTYE RGLARSGAVE GSENEHEVYR VVEMREPVAS KLANPGGGLS  240
VSGMLELASE LRAREDVMEP GNDQVCDKDV DFAVTFHDSR PSTVVKEIQR EKVVTRNKQV  300
VFNKRRRGPV RISEVEDLDT NESENCNSIP TPEVNRVQET LKSSTQELRA LVTDPLPEAL  360
QVAEGVASDL ATKNVSHEHP VESQKETEAD AATNASVEQS TRHVRSSDAN LDKPSCSHQD  420
NGTQPSLMAR NSTAHTYEWD DSIDDDPDTS VKRSKLHLPS PKIKVVSPLK KYAPTKILKR  480
RKVKRWSLLE EDTLRDGVNK YGRGNWKLIL NSYSDIFEER TEVDLKDKWR NMTR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1475481KILKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029313.10.0uncharacterized protein LOC21393957 isoform X1
TrEMBLA0A2P5AM890.0A0A2P5AM89_PARAD; GAMYB transcription factor
STRINGXP_010108474.11e-180(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-17MYB_related family protein