PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15172.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family Trihelix
Protein Properties Length: 189aa    MW: 21004 Da    PI: 9.7555
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15172.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix106.32.2e-33792187
   trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
               rW+k evlaLi++r+ +e +++++  k+plWe++s  m + g++rs+k+Ckekwen+nk++kk+ke++k+r +e+ +tcpyf++l+a
  PK15172.1  7 RWPKAEVLALIKLRSGLEFKYQEAGPKGPLWEDISGEMTRMGYKRSAKRCKEKWENINKYFKKVKESNKQR-PEDAKTCPYFHELDA 92
               8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.841164IPR017877Myb-like domain
PfamPF138372.2E-23693No hitNo description
CDDcd122031.18E-27671No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
TTPSSSRWPK AEVLALIKLR SGLEFKYQEA GPKGPLWEDI SGEMTRMGYK RSAKRCKEKW  60
ENINKYFKKV KESNKQRPED AKTCPYFHEL DALYRNKVIG TSMVTPQQHH HQQQQQPPKP  120
PTPAAPPAPA PAPALAAPPP NINVPAEIKT SGPAAPTSTT FQQQPTDKPE DIVMELMKVH  180
EQEKCGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470321.12e-59PREDICTED: trihelix transcription factor GTL1
SwissprotQ9C8821e-47GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBLA0A2P5F5I31e-70A0A2P5F5I3_TREOI; GAMYB transcription factor
STRINGGorai.003G072300.17e-59(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.17e-49Trihelix family protein
Publications ? help Back to Top
  1. Caro E,Desvoyes B,Gutierrez C
    GTL1 keeps cell growth and nuclear ploidy under control.
    EMBO J., 2012. 31(24): p. 4483-5
    [PMID:23188085]
  2. Zheng X, et al.
    The Wheat GT Factor TaGT2L1D Negatively Regulates Drought Tolerance and Plant Development.
    Sci Rep, 2016. 6: p. 27042
    [PMID:27245096]
  3. Shibata M, et al.
    GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis.
    Development, 2018.
    [PMID:29439132]