PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK15168.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 723aa MW: 80156.5 Da PI: 5.9293

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK15168.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.7e-05	553	590	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ a K s + Le++++++ +Lq PK15168.1 553 RQLIQDRIKELRELIPSgA------KCSIDSLLERTIKHMLYLQ 590 77899**********77......777778**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.5E-30	5	152	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	10.372	540	589	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence Send to blast
MGTDLQQVLR SLCLNSEWKY AVFWKLKHRA RMVLTWEDAY YDKSEEHSPA VERLHDDPLG 60 LAVAKMSYHV YSLGEGIVGQ VAVSGKHQWI FADKHEMCTW SAFEYSSGWQ DQFSAGIKTI 120 AVVAVAPLGV VQLGSLNKVV EDMKMIAHIR DVLMALQDSS LGCIPSSMPS SMNSSSNLPD 180 IPSKGFAPEA ISDCLHNLDK ALNEERQDIW FSIFPYLGKD NDSSYDWSLL DNQQEKTADI 240 VINNGGPELP ASGADKNTKL AQSESNILNL EHHKVIGMNM SDKWKGGKEI SSCKVTQVDS 300 INSVNAIVPA KKVEVDSVNF SSVPIDSAIC DRVRLDNVDY YQNGVLHVSE PSDFKFQKDL 360 ENLKFLTESS HMDTSTASLE FPAGYELHEA LGPSFFKKSK YFDWEATKSE GRIPEMPGQT 420 ICSQLTSDFH PEPLLEAVIA SVCQSHSDVR SEKSFCKSVQ SLLTTENYPE PSSHTTLVTD 480 SSNHSNGPAS LVGEDTPHCL SSSGVCGAMS PKGFSSNCPS SCSEQLERSS APAKNNKKRA 540 RPGENCRPRP RDRQLIQDRI KELRELIPSG AKCSIDSLLE RTIKHMLYLQ SIAKHADKLN 600 KYTDVKSSHK ETSMLESSSY ERGSSWAVEV GGNLKVCSII VENLNKNGQM VVEMMCEECS 660 HFLEIAEAIK SLGLTILKGV TEAHGDKTWI CFVVEGQSNR SLHRMDILWS LVQILQPKNA 720 TQQ

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence Send to blast

MGTDLQQVLR SLCLNSEWKY AVFWKLKHRA RMVLTWEDAY YDKSEEHSPA VERLHDDPLG  60
LAVAKMSYHV YSLGEGIVGQ VAVSGKHQWI FADKHEMCTW SAFEYSSGWQ DQFSAGIKTI  120
AVVAVAPLGV VQLGSLNKVV EDMKMIAHIR DVLMALQDSS LGCIPSSMPS SMNSSSNLPD  180
IPSKGFAPEA ISDCLHNLDK ALNEERQDIW FSIFPYLGKD NDSSYDWSLL DNQQEKTADI  240
VINNGGPELP ASGADKNTKL AQSESNILNL EHHKVIGMNM SDKWKGGKEI SSCKVTQVDS  300
INSVNAIVPA KKVEVDSVNF SSVPIDSAIC DRVRLDNVDY YQNGVLHVSE PSDFKFQKDL  360
ENLKFLTESS HMDTSTASLE FPAGYELHEA LGPSFFKKSK YFDWEATKSE GRIPEMPGQT  420
ICSQLTSDFH PEPLLEAVIA SVCQSHSDVR SEKSFCKSVQ SLLTTENYPE PSSHTTLVTD  480
SSNHSNGPAS LVGEDTPHCL SSSGVCGAMS PKGFSSNCPS SCSEQLERSS APAKNNKKRA  540
RPGENCRPRP RDRQLIQDRI KELRELIPSG AKCSIDSLLE RTIKHMLYLQ SIAKHADKLN  600
KYTDVKSSHK ETSMLESSSY ERGSSWAVEV GGNLKVCSII VENLNKNGQM VVEMMCEECS  660
HFLEIAEAIK SLGLTILKGV TEAHGDKTWI CFVVEGQSNR SLHRMDILWS LVQILQPKNA  720
TQQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010111900.1	0.0	transcription factor bHLH155 isoform X1
TrEMBL	A0A2P5FBC1	0.0	A0A2P5FBC1_TREOI; MYC/MYB transcription factor
STRING	XP_010111900.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5027	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	0.0	conserved peptide upstream open reading frame 7