PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15082.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 547aa    MW: 60990.7 Da    PI: 4.947
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15082.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.11.3e-1331765472374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                + lL+ cA+av+++d++ +++l+++l++l+s +gdp+qRl ay++e+L a++a+s+s++ykal+++e +   s+e ++++++++e++P++kf+++ aN a
  PK15082.1 176 KGLLFICAQAVAENDKSTTEWLISELRQLVSVSGDPLQRLSAYMLEGLVAKMASSGSSIYKALRCKEPA---SAELFSYMHILYEICPYFKFGYMSANGA 272
                5689****************************************************************9...9*************************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                I eav+ e+ vHiiDf+i qG+QW+ L++aL++Rp+gpp++RiT++++++s   +   le +g rL+k+Ae+++vpfefn+ v +++++++le+L v+pg
  PK15082.1 273 IAEAVKDESVVHIIDFQIVQGAQWMILIHALSTRPGGPPKIRITAIDDSTSAyaRGGGLEIVGLRLSKIAESCKVPFEFNA-VDTSVAEVQLEDLGVRPG 371
                ************************************************998899999************************.799*************** PP

       GRAS 200 EalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                Ea+aVn++l+lh+++desv ++   +rd++L+l kslsP+vv++veqe+++n+++F  rf+e+++yy+a+f+sl+++lpre++eri+vE+++l+r+ivnv
  PK15082.1 372 EAIAVNFALMLHHMPDESVGSQTpnHRDRLLRLTKSLSPNVVTLVEQELNTNTAPFYSRFVETFNYYMAVFESLDVTLPREHKERINVEQHCLARDIVNV 471
                ******************97766669************************************************************************** PP

       GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                +ac g er+erhe l+kWr+r+++aGF+p+pls  +++++k+ll++++++ +++ee++g+l+lgW+d++++s +aWr
  PK15082.1 472 IACDGPERVERHEMLGKWRSRFTMAGFRPYPLSPLVNSTIKALLQNYSEK-FTLEERDGALYLGWMDKAMISSCAWR 547
                ************************************************65.*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.891149528IPR005202Transcription factor GRAS
PfamPF035144.4E-131176547IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MKESQSYRIS NGSHRFLAQS DEDPESYCWA PIHNIDNLKA ANDSQGSHLA VKTFTQYCTL  60
ESSSGTSSNP VQNSSSSVSF SPNGSPSSQP ETQSYLTYQH LSPDNFCGSP VSHSCLTDDT  120
DDLRHKIREL ESVMQGTDSD FPEMYNISNQ VEQNEVSLEG DNWGRLMDML SASDLKGLLF  180
ICAQAVAEND KSTTEWLISE LRQLVSVSGD PLQRLSAYML EGLVAKMASS GSSIYKALRC  240
KEPASAELFS YMHILYEICP YFKFGYMSAN GAIAEAVKDE SVVHIIDFQI VQGAQWMILI  300
HALSTRPGGP PKIRITAIDD STSAYARGGG LEIVGLRLSK IAESCKVPFE FNAVDTSVAE  360
VQLEDLGVRP GEAIAVNFAL MLHHMPDESV GSQTPNHRDR LLRLTKSLSP NVVTLVEQEL  420
NTNTAPFYSR FVETFNYYMA VFESLDVTLP REHKERINVE QHCLARDIVN VIACDGPERV  480
ERHEMLGKWR SRFTMAGFRP YPLSPLVNST IKALLQNYSE KFTLEERDGA LYLGWMDKAM  540
ISSCAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-6418254626378Protein SCARECROW
5b3h_A6e-6418254625377Protein SCARECROW
5b3h_D6e-6418254625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097275.10.0scarecrow-like protein 21
RefseqXP_024021934.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A2P5F8H60.0A0A2P5F8H6_TREOI; GRAS transcription factor
STRINGXP_010097275.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]