PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK15082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRAS | ||||||||
Protein Properties | Length: 547aa MW: 60990.7 Da PI: 4.947 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 437.1 | 1.3e-133 | 176 | 547 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 + lL+ cA+av+++d++ +++l+++l++l+s +gdp+qRl ay++e+L a++a+s+s++ykal+++e + s+e ++++++++e++P++kf+++ aN a PK15082.1 176 KGLLFICAQAVAENDKSTTEWLISELRQLVSVSGDPLQRLSAYMLEGLVAKMASSGSSIYKALRCKEPA---SAELFSYMHILYEICPYFKFGYMSANGA 272 5689****************************************************************9...9*************************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 I eav+ e+ vHiiDf+i qG+QW+ L++aL++Rp+gpp++RiT++++++s + le +g rL+k+Ae+++vpfefn+ v +++++++le+L v+pg PK15082.1 273 IAEAVKDESVVHIIDFQIVQGAQWMILIHALSTRPGGPPKIRITAIDDSTSAyaRGGGLEIVGLRLSKIAESCKVPFEFNA-VDTSVAEVQLEDLGVRPG 371 ************************************************998899999************************.799*************** PP GRAS 200 EalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 Ea+aVn++l+lh+++desv ++ +rd++L+l kslsP+vv++veqe+++n+++F rf+e+++yy+a+f+sl+++lpre++eri+vE+++l+r+ivnv PK15082.1 372 EAIAVNFALMLHHMPDESVGSQTpnHRDRLLRLTKSLSPNVVTLVEQELNTNTAPFYSRFVETFNYYMAVFESLDVTLPREHKERINVEQHCLARDIVNV 471 ******************97766669************************************************************************** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +ac g er+erhe l+kWr+r+++aGF+p+pls +++++k+ll++++++ +++ee++g+l+lgW+d++++s +aWr PK15082.1 472 IACDGPERVERHEMLGKWRSRFTMAGFRPYPLSPLVNSTIKALLQNYSEK-FTLEERDGALYLGWMDKAMISSCAWR 547 ************************************************65.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.891 | 149 | 528 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.4E-131 | 176 | 547 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 547 aa Download sequence Send to blast |
MKESQSYRIS NGSHRFLAQS DEDPESYCWA PIHNIDNLKA ANDSQGSHLA VKTFTQYCTL 60 ESSSGTSSNP VQNSSSSVSF SPNGSPSSQP ETQSYLTYQH LSPDNFCGSP VSHSCLTDDT 120 DDLRHKIREL ESVMQGTDSD FPEMYNISNQ VEQNEVSLEG DNWGRLMDML SASDLKGLLF 180 ICAQAVAEND KSTTEWLISE LRQLVSVSGD PLQRLSAYML EGLVAKMASS GSSIYKALRC 240 KEPASAELFS YMHILYEICP YFKFGYMSAN GAIAEAVKDE SVVHIIDFQI VQGAQWMILI 300 HALSTRPGGP PKIRITAIDD STSAYARGGG LEIVGLRLSK IAESCKVPFE FNAVDTSVAE 360 VQLEDLGVRP GEAIAVNFAL MLHHMPDESV GSQTPNHRDR LLRLTKSLSP NVVTLVEQEL 420 NTNTAPFYSR FVETFNYYMA VFESLDVTLP REHKERINVE QHCLARDIVN VIACDGPERV 480 ERHEMLGKWR SRFTMAGFRP YPLSPLVNST IKALLQNYSE KFTLEERDGA LYLGWMDKAM 540 ISSCAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-64 | 182 | 546 | 26 | 378 | Protein SCARECROW |
5b3h_A | 6e-64 | 182 | 546 | 25 | 377 | Protein SCARECROW |
5b3h_D | 6e-64 | 182 | 546 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010097275.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_024021934.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q8H125 | 0.0 | SCL5_ARATH; Scarecrow-like protein 5 | ||||
TrEMBL | A0A2P5F8H6 | 0.0 | A0A2P5F8H6_TREOI; GRAS transcription factor | ||||
STRING | XP_010097275.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1653 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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