PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK14942.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 82aa MW: 9386.5 Da PI: 9.894 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.7e-08 | 13 | 57 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +++ +a +++ ++ +W ++ar +g +++++++k ++ PK14942.1 13 SWTAMQNKQFERALALYDKDtpdRWLKVARAVGGNKSPEEVKRHY 57 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.004 | 9 | 65 | IPR017884 | SANT domain |
SMART | SM00717 | 4.2E-7 | 10 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.87E-11 | 12 | 69 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-4 | 13 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.9E-6 | 13 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.81E-5 | 14 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MASNSLRSSS SSSWTAMQNK QFERALALYD KDTPDRWLKV ARAVGGNKSP EEVKRHYEIL 60 EEDIKHIESG KIPFPNYRSS SK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-33 | 9 | 81 | 6 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012085932.1 | 4e-38 | protein RADIALIS-like 3 | ||||
Swissprot | Q58FS3 | 6e-33 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A2P5D2W5 | 3e-40 | A0A2P5D2W5_PARAD; Octamer-binding transcription factor | ||||
STRING | GSMUA_Achr2P22930_001 | 3e-37 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 9e-31 | RAD-like 1 |
Publications ? help Back to Top | |||
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