PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK14825.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

M-type_MADS

Protein Properties

Length: 84aa MW: 9506.92 Da PI: 10.1881

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK14825.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	103.1	1e-32	13	62	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+i+fss+gklye+ PK14825.2 13 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFG 62 79**********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.0E-35	5	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.305	5	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.2E-32	7	27	IPR002100	Transcription factor, MADS-box
CDD	cd00265	8.26E-42	8	77	No hit	No description
SuperFamily	SSF55455	2.35E-32	10	79	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-28	14	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.2E-32	27	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.2E-32	42	63	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
NAEALVTGGV ELKRIENKIN RQVTFSKRRN GLLKKAYELS VLCDAEVALI VFSSRGKLYE 60 FGSAGITKTL ERYQRCSFTP HDNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	5e-22	10	84	6	79	MEF2 CHIMERA
6byy_B	5e-22	10	84	6	79	MEF2 CHIMERA
6byy_C	5e-22	10	84	6	79	MEF2 CHIMERA
6byy_D	5e-22	10	84	6	79	MEF2 CHIMERA
6bz1_A	5e-22	10	84	6	79	MEF2 CHIMERA
6bz1_B	5e-22	10	84	6	79	MEF2 CHIMERA
6bz1_C	5e-22	10	84	6	79	MEF2 CHIMERA
6bz1_D	5e-22	10	84	6	79	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015899344.1	3e-45	agamous-like MADS-box protein AGL6 isoform X2
Refseq	XP_024935372.1	4e-45	agamous-like MADS-box protein AGL6 isoform X1
Refseq	XP_028117326.1	2e-45	agamous-like MADS-box protein AGL6 isoform X7
Swissprot	Q8LLR1	7e-44	MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBL	A0A061DTT5	1e-43	A0A061DTT5_THECC; AGAMOUS LIKE6-like protein
TrEMBL	A0A142CJ66	1e-43	A0A142CJ66_CAMSI; MADS-box transcription factor AGAMOUS-like protein
TrEMBL	K7U0W6	1e-43	K7U0W6_9ERIC; Agl6
STRING	EOX96140	2e-44	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	9e-40	AGAMOUS-like 6

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]