PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14811.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 389aa    MW: 42556.3 Da    PI: 9.8923
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14811.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-174794148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++q+G g W++ +++ g+ R++k+c++rw +yl
        PK14811.1 47 KGAWTPEEDQKLLSYIQQHGEGGWRSLPQKAGLSRCGKSCRLRWANYL 94
                     79********************************************97 PP
2Myb_DNA-binding52.21.4e-16100143146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eE++ +v+++  lG++ W++Ia+ ++ +Rt++++k++w++
        PK14811.1 100 RGAFSPEEELTIVRLHSVLGNR-WSAIAKNLP-KRTDNEIKNHWNT 143
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-243897IPR009057Homeodomain-like
PROSITE profilePS5129416.1594294IPR017930Myb domain
SuperFamilySSF466899.54E-3044141IPR009057Homeodomain-like
SMARTSM007171.7E-134696IPR001005SANT/Myb domain
PfamPF002493.5E-164794IPR001005SANT/Myb domain
CDDcd001671.75E-104994No hitNo description
PROSITE profilePS5129424.62495149IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2498148IPR009057Homeodomain-like
SMARTSM007178.0E-1699147IPR001005SANT/Myb domain
PfamPF002493.0E-15100143IPR001005SANT/Myb domain
CDDcd001671.31E-11102145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
XAIYLIIWVC NWLQQIKYLQ INAVVFNIGS RRDMGRSPCC NVQGLKKGAW TPEEDQKLLS  60
YIQQHGEGGW RSLPQKAGLS RCGKSCRLRW ANYLRPDIKR GAFSPEEELT IVRLHSVLGN  120
RWSAIAKNLP KRTDNEIKNH WNTRLKKCLI ESAAYHHQNY NSSSTTSTIH LKKNDGTDPA  180
KSIGSNTSTT TSAHLLLNEL AASPKLKSSN NSLALLLSQP YRAGNGDGDV EGARHKKVLN  240
SVTVLNKLAT TCLKHNELPN CTIHDTLKTV LSKSCAPSCD AAKHSKSSSI SIPIIEIPNK  300
CSTVMESTKE GNGSILDQEA KYVNPATSPR VIVLNEMASK LAQVKRRCPA LLNKSTDLVA  360
SGVVTESNGS SPALQIPGPA ESPVSRNDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27451475106B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024019570.12e-75transcription factor MYB41 isoform X1
RefseqXP_024019571.11e-75transcription factor MYB41 isoform X2
RefseqXP_024019572.11e-75transcription factor MYB41 isoform X2
TrEMBLA0A2P5D2351e-102A0A2P5D235_PARAD; GAMYB transcription factor
TrEMBLA0A2P5F7001e-102A0A2P5F700_TREOI; GAMYB transcription factor
STRINGXP_010093590.16e-73(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3217922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74080.14e-65myb domain protein 122