PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK14809.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 214aa MW: 25043.4 Da PI: 6.5298 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.8 | 1e-19 | 55 | 108 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ PK14809.1 55 KRKLSDEQVNLLEMNFGSEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKN 108 45899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 121.4 | 4.7e-39 | 54 | 145 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv+lLE++F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk+ +d+++++++ Le+ev +L+e+l++ PK14809.1 54 RKRKLSDEQVNLLEMNFGSEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKKLEQEYSNLKKIHDSVVHDKCCLESEVLKLKEQLSN 145 8***************************************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.714 | 49 | 109 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.8E-18 | 52 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.52E-16 | 54 | 110 | No hit | No description |
SuperFamily | SSF46689 | 5.99E-18 | 55 | 117 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.5E-17 | 55 | 108 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-21 | 56 | 116 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.1E-6 | 80 | 89 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 84 | 107 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.1E-6 | 89 | 105 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MNNTNNNQVE DHMVLYTQLY PGVYPQMVPQ QGETKTKRRR KKSKSAKEES ALARKRKLSD 60 EQVNLLEMNF GSEHKLESER KDRLAAELGL DPRQVAVWFQ NRRARWKNKK LEQEYSNLKK 120 IHDSVVHDKC CLESEVLKLK EQLSNAEMKI QRLTERVECV SSNSPSSSMS MEAVMDPPFL 180 GEFGVVEEYD DVFYVPDDNN PYINNGMEWM NLYM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 55 | RRRKKSKSAKEESALARKR |
2 | 39 | 56 | RKKSKSAKEESALARKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021679570.1 | 6e-93 | homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | O23208 | 3e-74 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A2P5BC59 | 1e-106 | A0A2P5BC59_PARAD; Octamer-binding transcription factor | ||||
STRING | XP_010099829.1 | 8e-91 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 4e-65 | homeobox protein 40 |
Publications ? help Back to Top | |||
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