PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14727.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family Trihelix
Protein Properties Length: 272aa    MW: 31161.9 Da    PI: 6.3441
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14727.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix109.52.1e-3487172187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+k+ev+aLi++rr +e ++ ++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+k+++kkr +e+s+tcpyf+ql+a
  PK14727.1  87 RWPKSEVQALINLRRTLELKYHENGPKGPLWEEISAGMRRLGYNRSSKRCKEKWENINKYFKKVKDSNKKR-PEDSKTCPYFHQLDA 172
                8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.08480144IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.4E-581143IPR009057Homeodomain-like
SMARTSM007171.0E-484146IPR001005SANT/Myb domain
SuperFamilySSF466894.53E-584146IPR009057Homeodomain-like
CDDcd122031.45E-2986151No hitNo description
PfamPF138377.0E-2487173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
XKDAAVIAFL QKVSAGGGSS AVVVPQNNSS HLFLSNNYQD HNNHHHHHIP AVSLPPLPSP  60
QQQHQQQPTP PARPKLGDNS SNLSPSRWPK SEVQALINLR RTLELKYHEN GPKGPLWEEI  120
SAGMRRLGYN RSSKRCKEKW ENINKYFKKV KDSNKKRPED SKTCPYFHQL DALYREKTTI  180
KNNVVDQIQN NNVLTMEPLM VQPERQWPDQ STNNNSEEEE DDEDDHEILL DDDEERDSSS  240
TELDQDLDHH HHDNKQGGSY NSVVVDNKLQ SS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023878109.13e-63trihelix transcription factor GT-2-like
TrEMBLA0A2P5DSH15e-77A0A2P5DSH1_PARAD; GAMYB transcription factor
STRINGXP_009787560.18e-60(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-56Trihelix family protein