PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK14700.4

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

HSF

Protein Properties

Length: 271aa MW: 31743.3 Da PI: 4.7316

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK14700.4	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	41.4	4e-13	2	44	52	103
HHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 52 SFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103 SFvRQLn+YgF+k++ ++ weF+++ F +++k+ll++i+r++ + PK14700.4 2 SFVRQLNTYGFRKIDADR---------WEFANEGFIRDQKHLLKSIRRRRAS 44 9************999.........*******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00447	4.6E-10	2	41	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	8.16E-11	2	41	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	4.0E-12	2	41	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.6E-4	2	41	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
XSFVRQLNTY GFRKIDADRW EFANEGFIRD QKHLLKSIRR RRASSQPFPH EQQALGPCVE 60 VGRFGLDAEI DRLRRDKQVL MMELVKLRQQ QQNTRAYLQA MEQRLQGTEM KQQQMMAFLA 120 RAMKNPAFLQ QLLQQKERRK VIEEAMTKKR RRPIDQGPSS RSSGIETSHG SIKVEPLESS 180 DYGFEVSELE ALAFEMQGFG KLRMEQEEGD EELEPPESGD RELDDGFWEE LFSEDAKGVE 240 DEDVNVLTDH FGCLGSSPRE QEELREEDYW W

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	41	RDQKHLLKSIRRRR
2	137	151	RRKVIEEAMTKKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015891434.1	1e-133	heat stress transcription factor A-7a-like
Refseq	XP_015891435.1	1e-133	heat stress transcription factor A-7a-like
Refseq	XP_024932846.1	1e-133	heat stress transcription factor A-7a-like
Refseq	XP_024933006.1	1e-133	heat stress transcription factor A-7a-like isoform X1
Refseq	XP_024933007.1	1e-133	heat stress transcription factor A-7a-like isoform X1
Refseq	XP_024933008.1	1e-133	heat stress transcription factor A-7a-like isoform X2
Swissprot	Q6VBB2	1e-79	HFA2B_ORYSJ; Heat stress transcription factor A-2b
Swissprot	Q9LUH8	2e-79	HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBL	A0A2P5FB07	1e-147	A0A2P5FB07_TREOI; Heat shock transcription factor
STRING	XP_010087101.1	1e-128	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1100	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	5e-73	heat shock transcription factor A6B

Publications ? help Back to Top
Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern. J. Plant Physiol., 2013. 170(14): p. 1277-84 [PMID:23664583]