PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14700.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 612aa    MW: 67527.8 Da    PI: 4.8674
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14700.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.28.3e-1392436021374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                lv++L++cAeav++++++ a+al+++++ la +++ +m+++a++f++ALa+r++r    ly    p++  +++ se l++   f+e++P+lkf+h+taNq
  PK14700.1 243 LVHALMACAEAVQQNNFNIADALVKQINYLAMSQAGAMRKVATFFAQALARRIFR----LY----PENPLDHSLSEFLQM--HFYETCPYLKFAHFTANQ 332
                689****************************************************....44....444443446666555..5***************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.. 198
                aIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+e+g++La++Ae+++v+fe++ +va++l+dl+ ++L+++p  
  PK14700.1 333 AILEAFQGKKRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAPDNSDHLQEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLELRPse 432
                **************************************************************************************************88 PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                 E++aVn+v++lh+ll++++++++    vL++vk+++P++v++veqea+hn++ F++rf+eal+yys+lfdsle ++   + +++ +++++lg++i nvv
  PK14700.1 433 VESVAVNSVFELHKLLARPGAIDK----VLSVVKQMKPEIVTIVEQEANHNGPVFVDRFTEALHYYSTLFDSLEGSV---NGQDKIMSEVYLGKQIANVV 525
                899*************99999988....************************************************7...9999**************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                aceg +r+erhetl +Wr r+e++GF+p++l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  PK14700.1 526 ACEGPDRVERHETLTQWRTRMESSGFSPAHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLIATSAWQ 602
                ****************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.8E-3549122No hitNo description
PfamPF120411.2E-3649116IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098566.68217581IPR005202Transcription factor GRAS
PfamPF035142.9E-136243602IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MKREHPNQNN GSVDPSMDPS SSGTGAGKAA KIWDEDDNCC GGQPDGGMDE LLAVLGYKVR  60
SSDMAEVAQK LEQLEEAMCS VQQDNLSQLA SDTVHYNPSD LSTWLESMLT ELNPSPPNFD  120
SVMVPPPPPP PQSQPQRPSI IEETSYLAPA ESSTITSIDF PDQRNQNSLV FEDSSSSDYD  180
LKAIPGKAIY SNQTHFETTS SSRESKRLKP SSETYTNDVV SNQNDNSTRS VILVDSQENG  240
IRLVHALMAC AEAVQQNNFN IADALVKQIN YLAMSQAGAM RKVATFFAQA LARRIFRLYP  300
ENPLDHSLSE FLQMHFYETC PYLKFAHFTA NQAILEAFQG KKRVHVIDFS MNQGMQWPAL  360
MQALALRPGG PPAFRLTGIG PPAPDNSDHL QEVGWKLAQL AETIHVEFEY RGFVANSLAD  420
LDASMLELRP SEVESVAVNS VFELHKLLAR PGAIDKVLSV VKQMKPEIVT IVEQEANHNG  480
PVFVDRFTEA LHYYSTLFDS LEGSVNGQDK IMSEVYLGKQ IANVVACEGP DRVERHETLT  540
QWRTRMESSG FSPAHLGSNA FKQASMLLAL FAGGDGYRVE ENNGCLMLGW HTRPLIATSA  600
WQLAGKRLSA AH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-6723860113377Protein SCARECROW
5b3h_D7e-6723860113377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024193235.10.0DELLA protein GAIP-B
SwissprotQ6EI050.0GAIPB_CUCMA; DELLA protein GAIP-B
TrEMBLA0A2P5CNX80.0A0A2P5CNX8_PARAD; DELLA transcription factor
STRINGXP_004298516.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein