PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14426.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 429aa    MW: 49432.2 Da    PI: 8.5035
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14426.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.24.8e-21138236199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ffk  +++++l  g l++p+ fa++h ++  +s ++tl+ ++  ++W+v+++yr + ++   +++GW +Fv++n+L++gD++vF l+++++ ++ v +fr
  PK14426.1 138 FFKMVMQPYYLLGGKLTFPRIFAKKHLSD--RSYKVTLKVPNEkKTWSVTYTYREHERAkPRFQGGWAKFVRENNLEVGDVCVFVLIKETNISFEVVIFR 235
                89************************766..78899999955549********888887899*************************9988888999988 PP

                S CS
         B3  99 k 99 
                +
  PK14426.1 236 A 236
                5 PP
2B3376.1e-12300384589
                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
         B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                 +++++ ++  +++p + +e++  ++ +  + +l  ++g + W+ ++++      +s r ++ +GWk+F ++n+L++gD++vF+l +  e
  PK14426.1 300 VIQPSNKRL--VCVPLDIVEKYIRNE-G--DAILSIPNGrQYWTAQFKMmksyIDGSYRAFIYNGWKKFMEDNNLEVGDVCVFELLNGIE 384
                555554444..688999999995443.3..4666666674446666644444455666688999********************875433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.81E-24132236IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-24132236IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-21137235No hitNo description
PfamPF023623.4E-18138236IPR003340B3 DNA binding domain
PROSITE profilePS5086314.607138237IPR003340B3 DNA binding domain
SMARTSM010198.5E-20138237IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-14290394IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-16290395IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.997294395IPR003340B3 DNA binding domain
CDDcd100178.81E-12296393No hitNo description
SMARTSM010194.7E-8297395IPR003340B3 DNA binding domain
PfamPF023626.0E-10298384IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
TFRYDGNSEI NAVIFDTNTV EIDYPSIPIC FDKSTIDGEL RVPKREVIDV VDSIEILDDI  60
SQYHETGLKS SCSRSPKRMK TSYTGNFDSP KKRKGDNFAT TTTKKMPYGI PKYMKTLDES  120
ERIAALKRSN GFKSEYPFFK MVMQPYYLLG GKLTFPRIFA KKHLSDRSYK VTLKVPNEKK  180
TWSVTYTYRE HERAKPRFQG GWAKFVRENN LEVGDVCVFV LIKETNISFE VVIFRAGASS  240
EGSVDITHNS SSEKQEHRCK SSQRTDPQLV EKQLPSTFHE RVKVLEKDAI EHENSLFKIV  300
IQPSNKRLVC VPLDIVEKYI RNEGDAILSI PNGRQYWTAQ FKMMKSYIDG SYRAFIYNGW  360
KKFMEDNNLE VGDVCVFELL NGIEISFQVL IVRVSGNLNH QRPQASNSVE GENKSKEDES  420
VKIERDDEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1411523525141B3 domain-containing transcription factor VRN1
4i1k_B5e-1411523525141B3 domain-containing transcription factor VRN1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5BZ571e-138A0A2P5BZ57_PARAD; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-16B3 family protein