PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14382.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 264aa    MW: 28940.8 Da    PI: 6.5032
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14382.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.4e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+++ +  G+g +W + +++ g++R++k+c++rw++yl
        PK14382.1 14 RGPWSPEEDAALKHYMHNNGTGgNWIALPQKAGLNRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding37.26.7e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd  +  +    G++ W+ Ia+ ++ gRt++++k++w++
        PK14382.1  69 GGFTEEEDNVIWTLYSNIGSR-WSVIASQLP-GRTDNDVKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.106962IPR017930Myb domain
SuperFamilySSF466892.38E-2612109IPR009057Homeodomain-like
SMARTSM007179.0E-101364IPR001005SANT/Myb domain
PfamPF002495.2E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-221568IPR009057Homeodomain-like
CDDcd001674.72E-71662No hitNo description
PROSITE profilePS5129420.11863117IPR017930Myb domain
SMARTSM007176.4E-1067115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2369117IPR009057Homeodomain-like
PfamPF002491.4E-1069111IPR001005SANT/Myb domain
CDDcd001676.49E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRAPCCDKT KVKRGPWSPE EDAALKHYMH NNGTGGNWIA LPQKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNVIW TLYSNIGSRW SVIASQLPGR TDNDVKNYWN TKLKKKLLAR  120
STNSNDTTDN STTDHLNLTR FSSPLINPKA ENSDQGNSAY GDHSTNSDTL PYLMNVNCVQ  180
SFDLKHPTSQ LSYSSNPVEV SDFGTNGNTG SSISSTSSSS TLAMENCTSF ASWAGTGNVN  240
IEDGILLDLG FDSSNDTFLS GFGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017297.13e-97transcription factor MYB36
SwissprotQ9FKL28e-71MYB36_ARATH; Transcription factor MYB36
TrEMBLQ4A3I71e-146Q4A3I7_HUMLU; Myb-like protein
STRINGXP_008337621.12e-94(Malus domestica)
STRINGXP_008352348.12e-94(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.17e-72myb domain protein 68
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]