PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK14089.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | TALE | ||||||||
Protein Properties | Length: 650aa MW: 70970.8 Da PI: 7.2203 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.8 | 2e-09 | 423 | 460 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gL+ +qV++WF N R + PK14089.1 423 FEHflHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVR 460 554459******************************88 PP | |||||||
2 | BELL | 106.1 | 2.4e-34 | 290 | 357 | 5 | 72 |
BELL 5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +kkk++L+s+l+eV++rYkqy++q+qtv+ sFe vaglg+a+pY++lA ka+++hF+cLk ai++q+ PK14089.1 290 SRKKKSRLISMLDEVYRRYKQYYQQMQTVVTSFEYVAGLGNAAPYANLAVKAMTKHFKCLKSAIMDQL 357 689**************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.8E-50 | 214 | 355 | IPR006563 | POX domain |
Pfam | PF07526 | 3.8E-39 | 219 | 353 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.098 | 401 | 464 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-10 | 404 | 468 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.42E-13 | 404 | 465 | No hit | No description |
SuperFamily | SSF46689 | 5.56E-17 | 406 | 471 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 407 | 468 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.2E-18 | 421 | 460 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048457 | Biological Process | floral whorl morphogenesis | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 650 aa Download sequence Send to blast |
EPYHVPQQSR RDKLRVVATH SSTNPASACI DAATANFHGS GGGLLPLATS YDPTSSDFLS 60 CTKEEGVVNL MGLVNGSSSS GSRNPFMDPM TSIQDINTNP FLFSSQALQS FRDFENQQGF 120 NNNAVFKPEP LSLSLSSHHD PTRIQNNTNN NNHHQLPLEL NLQRFGSAFY GGGGGGGSTT 180 NNNANTVTLA VVGGGSVADD GVGSRSSVPL GPFTGYSSIL KGSRFLKPAQ QLLEEFCNVG 240 GGSRVVYGDE LAADPTLMES PVEGLSSGSG GVNVDDVELS SGISDGGESS RKKKSRLISM 300 LDEVYRRYKQ YYQQMQTVVT SFEYVAGLGN AAPYANLAVK AMTKHFKCLK SAIMDQLQFS 360 NKDNCHTNHH GKEEVPTFRN SNRGNLYSQR PIQGSGFLDH QPVWRPQRGL PERAVTVLRA 420 WLFEHFLHPY PTDTDKLMLA KQTGLSRSQV SNWFINARVR LWKPMVEEIH MLETRQAQKA 480 SHREDRNTMR PNAQEHVASS ANNLASENPS TSMHRVHDTT LKRSRSDVPN VMDSTAGGVS 540 EEMNMSYDNL PTHLHNHHHH HHQVGVAANA MNMSGIGSNG VSLTLGLHQN NGGTIGLSEP 600 FPINAAQRFG LGLEGNNEGY VMGAFETQNR HFGRDHHHVM GGQLLHDFVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 2e-16 | 410 | 468 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 2e-16 | 410 | 468 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 2e-16 | 410 | 467 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 410 | 467 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 2e-16 | 410 | 468 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 2e-16 | 410 | 468 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010654234.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A2P5CFU7 | 0.0 | A0A2P5CFU7_PARAD; Knotted like homeodomain transcription factor | ||||
STRING | VIT_08s0007g01290.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2810 | 33 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 2e-98 | TALE family protein |