PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK14080.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Dof

Protein Properties

Length: 336aa MW: 36480.8 Da PI: 7.069

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK14080.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.1	4.4e-39	37	97	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ PK14080.1 37 QQQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSK 97 6899*****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-28	36	95	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-33	39	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.674	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MQDVHSIGDG GRFHAGSGGG TGAASDRRLR PQHNQTQQQA LKCPRCDSLN TKFCYYNNYN 60 LSQPRHFCKN CRRYWTKGGV LRNVPVGGGC RKTKRSKQKT SSVSVTVTTA PVLPPPSQDR 120 KSNSHSSSES SSLTATNTNA ATEAVSAPST SSGSNLLSVN QESKFFVSQS TNASFEVSAL 180 IDQSVSDCGI FSDIGSFTNL ITSSSTGGGA LEAFEYTSIC DISISPFRLN QQNQDHHHHQ 240 VSQSQTWQQQ NTKTNVAPPD HDQLKMQEIT GGLLDQTSQA DLSVLQDRSN GGVFGSLGDW 300 QSCGDQGIFD LPNTVDQTYW GQSQWTDQDH TSVYLP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010101639.1	1e-134	dof zinc finger protein DOF5.4
TrEMBL	A0A2P5BC99	1e-135	A0A2P5BC99_PARAD; Zinc finger, Dof-type
STRING	XP_010101639.1	1e-133	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5998	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	3e-40	OBF binding protein 4