PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK13921.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 496aa    MW: 56839.2 Da    PI: 5.2508
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK13921.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2461.5e-751284913373
       GRAS   3 elLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                +lLl+ Aea++ ++  la+++++rl+      ++g +++ Rla +ft++L+++ +++ ++++  l + + + ++s ++ +a+++ +e+sP++kfsh+taN
  PK13921.1 128 DLLLNGAEAIEVKNWLLATKIISRLNCVllDRQHGdTSFGRLAMFFTQGLHKKCYKTPDHMA--LYSHQPDFEQSNSQYSAFQIIQELSPYVKFSHFTAN 225
                689***********************877777777689******************555554..566666667899999********************* PP

       GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                qaI e+++g++ vH+iDfdi++G+QWp+L+  L +R+e   slR+T++   +++++  +++tg+rL++fA++++++f f+ l  +  ++ ++++L+v  g
  PK13921.1 226 QAIIESTQGDKDVHVIDFDIMEGIQWPPLMVDLGKRQEA--SLRVTAIIW-DKQNAVFVQQTGRRLKEFADSINLRFVFDQLEIS--SEKDFDKLEV--G 318
                ************************************766..9******99.6679999***********************8444..5556688865..8 PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsl..eaklpreseerikvErellgre 293
                 +l+ n++++  +l+++s sl +   ++L  + +lsPk++v+v++e    ++  s sF+e f+eal++y+al dsl  + + ++++  r+ +E+ +lg +
  PK13921.1 319 QTLIGNCMIHQLHLPSKSFSLVK---SFLVWMTKLSPKILVLVQEElfnfSKILSMSFVEFFCEALHHYTALSDSLllSPNGGHKKGLRRLIENDILGIR 415
                89*************99999999...********************7665555788*******************98788888888************** PP

       GRAS 294 ivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                i + +++   e    +e+++ W++ l+   GFkp+p+s+++ +qak l++ ++  gy v++e+  l l+Wk++pL+++S W
  PK13921.1 416 ILDSLSQFPCE----KEEKMLWKDGLDClKGFKPIPISYNNISQAKFLVSLFS-GGYWVQHEKCKLNLCWKSKPLTTASIW 491
                *******9999....777888*****8658***********************.89************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.438100473IPR005202Transcription factor GRAS
PfamPF035145.1E-73128491IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MELKQIDYQR HSSLNLSYID KLDEYSFEAF PSFQIEDPLF VADVIKDGVV AYTHESMDRL  60
VQIEAGLMEI DTINQDIDVL GLDSHIENEF GSYLDKKVEE IAPVVLNKEG STFEDSQVEI  120
REESSLGDLL LNGAEAIEVK NWLLATKIIS RLNCVLLDRQ HGDTSFGRLA MFFTQGLHKK  180
CYKTPDHMAL YSHQPDFEQS NSQYSAFQII QELSPYVKFS HFTANQAIIE STQGDKDVHV  240
IDFDIMEGIQ WPPLMVDLGK RQEASLRVTA IIWDKQNAVF VQQTGRRLKE FADSINLRFV  300
FDQLEISSEK DFDKLEVGQT LIGNCMIHQL HLPSKSFSLV KSFLVWMTKL SPKILVLVQE  360
ELFNFSKILS MSFVEFFCEA LHHYTALSDS LLLSPNGGHK KGLRRLIEND ILGIRILDSL  420
SQFPCEKEEK MLWKDGLDCL KGFKPIPISY NNISQAKFLV SLFSGGYWVQ HEKCKLNLCW  480
KSKPLTTASI WVPIRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-4013449327380Protein SCARECROW
5b3h_A8e-4013449326379Protein SCARECROW
5b3h_D8e-4013449326379Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018814922.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2P5EDE60.0A0A2P5EDE6_TREOI; GRAS transcription factor
STRINGXP_004308265.11e-180(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131482130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-48GRAS family protein