PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK13763.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 927aa MW: 102574 Da PI: 6.1353 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.9 | 7.8e-18 | 322 | 421 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+k l+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++l +++ PK13763.1 322 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKLIMGF 419 89**************************555566778***************9989999999***9.********************876.777777777 PP E- CS B3 97 fr 98 ++ PK13763.1 420 RK 421 66 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.8E-29 | 314 | 425 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-19 | 319 | 421 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.39E-22 | 320 | 421 | No hit | No description |
PROSITE profile | PS50863 | 11.138 | 322 | 423 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-20 | 322 | 423 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-15 | 322 | 421 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.949 | 587 | 637 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 6.5E-9 | 592 | 634 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 927 aa Download sequence Send to blast |
MACMNVSCGA STSIEWKRGW ALRSGGYANL CDKCGSAYEQ LVYCDVYHSA ESGWRECISC 60 GKRLHCGCIA SRFLLELLDC GGVKCANCAK KSGSHLITIA DKPNEPGTSK VSELQHISSN 120 DQLDGNNNDS IKFMKLSNDT EGIGLRHLLQ SQHEETNGLF RKMKQEEVPP VGEAGNTYLS 180 SHNQGSNGSS EAAKAELRKA SIGTNDIYDA LPQTNLTMTL GGPLGNSNSS PSAIVDEREQ 240 SKTSSLFLQG ARSRHLLPKP PRSTVGTSLE GNTNMAPQVR VARPPAEGRG RNQLLPRYWP 300 RITDQELQQI SGDSNSTIVP LFEKMLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLK 360 IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLIMGFR 420 KASNSVAMQD THPSAIHNGG HSSEPFISGV FENLPIISGY SGLLQSLKGS ADTHLHALSK 480 QLSSASADIS WNKIDKHEGR SRENLLLPSL MVPERKRARN LGSKNKRLHI DSQEALELKL 540 TWEEAQDLLR PPPSAKPSTV MIEDHEFEEY EEPPVLGKRS IFLLRSTGEQ EQWTQCDSCS 600 KWRRLPVDVF LPYKWTCADN VWDQIRCSCS VPDELSPREL ESLLRMNKEF KKRRVVSSAN 660 RPPTHESESS GLDALANAAM LGDNATATEP GTTTVAATTT KHPRHRPGCS CIVCIQPPSG 720 KGKHKPSCTC NVCMTVKRRF KTLMLNKKKR QSEREAELAN RNHQKTLWDP RDETEVDSTT 780 SRHLSSQLDP SDNETRSANE SESKNHCTLA DTAKEALDLN SHPGIREEDS QAGSSRVSMM 840 SLLQNASRPL DTYLKQNGLT SLTQEQQQQQ QTSSASHAFP QATNESEEQV NNEDQEQCPN 900 PIVEEEHESD GNEQCGDNDD DDDDDEE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-70 | 300 | 429 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM439822 | 6e-47 | AM439822.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X016243.17, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024030048.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A2P5F4P1 | 0.0 | A0A2P5F4P1_TREOI; Zinc finger-type transcription factor | ||||
STRING | XP_010109656.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11018 | 32 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|