PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK13763.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 927aa    MW: 102574 Da    PI: 6.1353
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK13763.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.97.8e-18322421198
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l +++
  PK13763.1 322 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKLIMGF 419
                89**************************555566778***************9989999999***9.********************876.777777777 PP

                E- CS
         B3  97 fr 98 
                ++
  PK13763.1 420 RK 421
                66 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-29314425IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-19319421IPR015300DNA-binding pseudobarrel domain
CDDcd100178.39E-22320421No hitNo description
PROSITE profilePS5086311.138322423IPR003340B3 DNA binding domain
SMARTSM010192.5E-20322423IPR003340B3 DNA binding domain
PfamPF023622.1E-15322421IPR003340B3 DNA binding domain
PROSITE profilePS5105013.949587637IPR011124Zinc finger, CW-type
PfamPF074966.5E-9592634IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 927 aa     Download sequence    Send to blast
MACMNVSCGA STSIEWKRGW ALRSGGYANL CDKCGSAYEQ LVYCDVYHSA ESGWRECISC  60
GKRLHCGCIA SRFLLELLDC GGVKCANCAK KSGSHLITIA DKPNEPGTSK VSELQHISSN  120
DQLDGNNNDS IKFMKLSNDT EGIGLRHLLQ SQHEETNGLF RKMKQEEVPP VGEAGNTYLS  180
SHNQGSNGSS EAAKAELRKA SIGTNDIYDA LPQTNLTMTL GGPLGNSNSS PSAIVDEREQ  240
SKTSSLFLQG ARSRHLLPKP PRSTVGTSLE GNTNMAPQVR VARPPAEGRG RNQLLPRYWP  300
RITDQELQQI SGDSNSTIVP LFEKMLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLK  360
IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLIMGFR  420
KASNSVAMQD THPSAIHNGG HSSEPFISGV FENLPIISGY SGLLQSLKGS ADTHLHALSK  480
QLSSASADIS WNKIDKHEGR SRENLLLPSL MVPERKRARN LGSKNKRLHI DSQEALELKL  540
TWEEAQDLLR PPPSAKPSTV MIEDHEFEEY EEPPVLGKRS IFLLRSTGEQ EQWTQCDSCS  600
KWRRLPVDVF LPYKWTCADN VWDQIRCSCS VPDELSPREL ESLLRMNKEF KKRRVVSSAN  660
RPPTHESESS GLDALANAAM LGDNATATEP GTTTVAATTT KHPRHRPGCS CIVCIQPPSG  720
KGKHKPSCTC NVCMTVKRRF KTLMLNKKKR QSEREAELAN RNHQKTLWDP RDETEVDSTT  780
SRHLSSQLDP SDNETRSANE SESKNHCTLA DTAKEALDLN SHPGIREEDS QAGSSRVSMM  840
SLLQNASRPL DTYLKQNGLT SLTQEQQQQQ QTSSASHAFP QATNESEEQV NNEDQEQCPN  900
PIVEEEHESD GNEQCGDNDD DDDDDEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-703004292131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4398226e-47AM439822.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X016243.17, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030048.10.0B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2P5F4P10.0A0A2P5F4P1_TREOI; Zinc finger-type transcription factor
STRINGXP_010109656.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]