PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK13747.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 250aa    MW: 28670.2 Da    PI: 6.1969
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK13747.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.1e-10184240148
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqkyl 48 
                      r+ WT eE+e l d+v+++ +       Wk+I ++        Rt+ ++k++w++++
        PK13747.2 184 RLHWTVEEEEMLRDGVHKFSMMtnivlPWKKILEYGRlvfdPSRTPVDLKDKWRNLM 240
                      789*****************99*************99******************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.037179240IPR017877Myb-like domain
SMARTSM007176.4E-4183242IPR001005SANT/Myb domain
PfamPF002491.2E-6185239IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-10186241IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-9186242IPR009057Homeodomain-like
CDDcd116601.25E-10187240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
CGEGTAARID KLQGSSAKDP SNNDGEDGKE EDSGPMDDSK DERIVEENEE REILDTSEIA  60
GEVIIDDADI EKRATKKLLR EAKIVEEDEE QILTESSDGI DKSETESRVN RHRRFKQRAG  120
KTVCSENVTL PKRSSPRLWK SVARHKSTTK KNALLFNEKN TTSEKSQQAL KLVPTMEFSR  180
KRTRLHWTVE EEEMLRDGVH KFSMMTNIVL PWKKILEYGR LVFDPSRTPV DLKDKWRNLM  240
AKETAPINKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5A7N96e-79A0A2P5A7N9_PARAD; Octamer-binding transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120552022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.27e-06TRF-like 3