PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK13567.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | TCP | ||||||||
Protein Properties | Length: 240aa MW: 24879.7 Da PI: 10.5956 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.7 | 8.6e-38 | 14 | 93 | 3 | 83 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ s s+ +s PK13567.1 14 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStV--SVSVRGS 93 79******************************************************************87732..2222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.209 | 19 | 73 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.5E-32 | 19 | 94 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
XPQQLTATNG ALVVKKPPSK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE 60 WLLRQAEPSI IAATGTGTTP ASFSTVSVSV RGSAGNGLGG VSASLSTSSG NSGSLEHKPL 120 LGPTPFILGK RVRPDDGVGK DNHDGHDGVS VVGAMGSMVG SATTAPGGFW APHFGQVWSF 180 AAAPPDMQPS VSQQPLFVQQ QTIGEASAAR VGNYLPGHLN LLASLSGGQG NSGRREDDPR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010096790.1 | 1e-115 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 1e-91 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A2P5F0A8 | 1e-129 | A0A2P5F0A8_TREOI; TCP transcription factor | ||||
STRING | XP_010096790.1 | 1e-114 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 5e-77 | TCP family protein |