PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK13393.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ARF
Protein Properties Length: 662aa    MW: 73983.7 Da    PI: 7.0259
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK13393.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.7e-23119220199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+lt+sd+++ g +++p+ +ae++         ++ +   +  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF +   +++ l+
  PK13393.1 119 FAKTLTQSDANNGGGFSVPRYCAETIfppldfsAVPPVQ--NILAKDVHGETWRFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLR--ADNGDLC 214
                89*****************************96444445..6999*********************************************3..478888* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+++r+
  PK13393.1 215 VGIRRA 220
                ***996 PP
2Auxin_resp1102.5e-36271354183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+ +++FevvY+Prast+eF+v++  v +a++++++ GmRfkm fetedss++++ +Gt++  +  dp+rWp+S+Wr+L+
   PK13393.1 271 AATLAARGQPFEVVYYPRASTPEFCVRAPAVTAAMQIRWCSGMRFKMPFETEDSSRISWfMGTISNAQIEDPIRWPDSPWRLLQ 354
                 688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-36112222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-29113220IPR015300DNA-binding pseudobarrel domain
CDDcd100172.55E-22117219No hitNo description
PfamPF023621.2E-21119220IPR003340B3 DNA binding domain
SMARTSM010191.9E-22119221IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112119221IPR003340B3 DNA binding domain
PfamPF065072.3E-31271354IPR010525Auxin response factor
PROSITE profilePS5174518.88580661IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MDSGREPMRR DFEKCLDPQL WHACAGPLVQ MPSINSKVIY FPQGHVEHAQ GNVDFGNSRI  60
PSHVLCRVSA IKFMADPETD EVFAKMGLTP LRDNSNFDVE DEGYLGNNGI ENSEKPKSFA  120
KTLTQSDANN GGGFSVPRYC AETIFPPLDF SAVPPVQNIL AKDVHGETWR FRHIYRGTPR  180
RHLLTTGWSN FVNQKKLVAG DSIVFLRADN GDLCVGIRRA KKGIGCGHEY PYAWNPLAGN  240
YGSQYENSRV VPKPGMRDAR GKVKVESVVE AATLAARGQP FEVVYYPRAS TPEFCVRAPA  300
VTAAMQIRWC SGMRFKMPFE TEDSSRISWF MGTISNAQIE DPIRWPDSPW RLLQVTWDEP  360
DLLQNVKCVN PWLVELVSSM PMHVSPFSPP RKKMRLPQNP DFALVSHPMP LLPTNFLNSP  420
FHCIQDNIPA GIQGARHAQF GSYPVDLHRN ELQPGMLPLG LRKLDISDPL KNPSGGFMKN  480
TENSENISCW LKMGHPNQSL KANEETKTPQ LLLFGQVILT EEQLSKSSSG ENSSSEGNLD  540
KTANHSDNGS GSTVNSSDGR SPWYKFHHDG RSDQLHGQET GHCKVFIESD DVGRTLDLSL  600
LGSYQELYRK LGDMFGIEQV SGLFKNLLYL DATGSVKQTG EEPFSEFLKS VRRLTILTDP  660
RQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-781637551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021296004.10.0auxin response factor 18
SwissprotQ93YR90.0ARFP_ARATH; Auxin response factor 16
TrEMBLA0A2P5D3Z70.0A0A2P5D3Z7_TREOI; Auxin response factor
STRINGXP_006485698.10.0(Citrus sinensis)
STRINGXP_006436433.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Zhang GZ, et al.
    Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(1-2): p. 77-93
    [PMID:26496910]
  4. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  5. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  6. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  7. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  8. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]