PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK13355.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 356aa    MW: 39603.7 Da    PI: 6.2322
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK13355.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.92.2e-07150171223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C++Cgk F+r  nL+ H+r H
  PK13355.1 150 FCEICGKGFKRDANLRMHMRAH 171
                6*******************99 PP
2zf-C2H214.50.0001237260123
                EEETTTT.EEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                y+C+ C+ k Fs   +Lk+Hi+++
  PK13355.1 237 YSCNRCNkKKFSVLADLKSHIKNC 260
                99********************98 PP
3zf-C2H211.50.00092268284521
                TTTEEESSHHHHHHHHH CS
    zf-C2H2   5 dCgksFsrksnLkrHir 21 
                 Cg++Fsrk+ L  H+ 
  PK13355.1 268 TCGTTFSRKDKLFGHMA 284
                6**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.44E-6146172No hitNo description
Gene3DG3DSA:3.30.160.608.2E-6149171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0015149171IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.258149176IPR007087Zinc finger, C2H2
PROSITE patternPS000280151171IPR007087Zinc finger, C2H2
SMARTSM00355120199232IPR015880Zinc finger, C2H2-like
SMARTSM0035596237258IPR015880Zinc finger, C2H2-like
SMARTSM00355220265289IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSFPGEPIHI PDEFSGDFTH QVPFVNSNRQ LHLANLLSVQ ERMESVHRFL SESVNANASL  60
SFGQMTMVST EIFSAIQQVI DDGSALIALS QAPVAAASAA ASDVSKPIVD VKAESFEGET  120
KKEEEIDGGD GDFEVVELDS VELLAEHIHF CEICGKGFKR DANLRMHMRA HGNQYKTPEA  180
LSKPAERITE PDRKGPVRFS CPHVGCNRNK THKKFRPLKS AICAKNHFRR SHCPKMYSCN  240
RCNKKKFSVL ADLKSHIKNC GEVRWRCTCG TTFSRKDKLF GHMALFEGHM PAVMDDGDRS  300
EKGKTPILNG REGDEDMDDG MSFRDDDELF EGLLDGFGCP IQGFTLQDVL GSPTEF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087609.11e-130protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A2P5EZH21e-172A0A2P5EZH2_TREOI; TFIIH C1-like domain containing protein
STRINGXP_010087609.11e-130(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-69C2H2 family protein