PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK13064.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ARF
Protein Properties Length: 719aa    MW: 79101.8 Da    PI: 7.6401
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK13064.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.11.4e-22120221199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W++++i+r++++r++lt+GW++Fv++++L +gD++vF   +++++  +
  PK13064.1 120 FAKTLTQSDANNGGGFSVPRYCAETIfpgldytADPPVQ--TVIAKDVHGEMWKFRHIFRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RTKTGDIC 215
                89**************************99997555555..8************************************************..4588889* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+++r+
  PK13064.1 216 VGIRRA 221
                ***996 PP
2Auxin_resp113.91.5e-37290373183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa +a+++++Fe++Y+Pr+st+eF+vk+++v++a+++++s GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
   PK13064.1 290 AAARAANGEPFEIIYYPRVSTPEFCVKASSVKAAMRIQWSSGMRFKMAFETEDSSRISWfMGTIASVKVADPIRWPNSPWRLLQ 373
                 678999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-36112223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.15E-28115225IPR015300DNA-binding pseudobarrel domain
CDDcd100173.47E-20119220No hitNo description
SMARTSM010196.1E-21120222IPR003340B3 DNA binding domain
PROSITE profilePS5086312.915120222IPR003340B3 DNA binding domain
PfamPF023621.3E-20120221IPR003340B3 DNA binding domain
PfamPF065071.8E-32290373IPR010525Auxin response factor
PROSITE profilePS5174516.751605685IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MKDLEKSLDP QLWQACAGGM VNIPPVNSKV FYFPQGHAEH SQTHVDFSAV SIRIPPFVLC  60
RVSALKFMAD PESDEVFAKM RLVPLGINDF REEDDDEVVV VASGSDDNGS ENHHEKPTSF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPGLD YTADPPVQTV IAKDVHGEMW KFRHIFRGTP  180
RRHLLTTGWS NFVNQKKLVA GDSIVFLRTK TGDICVGIRR AKRGIGGGNG SDTTSGWNNG  240
SSYAGGFSVF MREDENKMGR NSGCGGNSGP TAGGNFRGTR RVRPEAVVEA AARAANGEPF  300
EIIYYPRVST PEFCVKASSV KAAMRIQWSS GMRFKMAFET EDSSRISWFM GTIASVKVAD  360
PIRWPNSPWR LLQVTWDEPD LLQNVKCVSP WLIESVANMP IIHMSSFSPP RKKLRFPTTQ  420
HPDFTFDGHF PVSSFLGNPL GPSSPMCFLP DNTPAGIQGA RHALFGLSLS DLQLNSNNNK  480
LQPQPGLLSS SFHQQLNQHS GISSGGLKRV RSDTTPTTTN NNNSESLSCL LTMGNSSPNA  540
EKSDSVKRHQ FVLFGQRILT EQQISADSHS DKAKFLSNSS SEKSSNNVGF SWHQGHQATE  600
FGMDTGHCKV FMESEDVGRT LDLSALGSYE ELYRKLANMF EIERSEMLTR VFYHDATGTL  660
KQTGEEPFSD FMKTAKRLTI IAAEDSSNKN VGRTWITGMR NAENGLGSSN KTGPLSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-74839551389Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017098.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2P5FTY20.0A0A2P5FTY2_TREOI; Auxin response factor
STRINGXP_010089974.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]