PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12959.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 394aa    MW: 43140.1 Da    PI: 5.2236
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12959.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-174893147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l ++v ++G ++W++Iar +  gR++k+c++rw + 
        PK12959.1 48 KGPWSPEEDAILSRLVSKFGARNWSLIARGIS-GRSGKSCRLRWCNQ 93
                     79******************************.***********985 PP
2Myb_DNA-binding55.11.7e-17100144147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r++++ eEd+++v a++ +G++ W++Iar +  gRt++ +k++w++ 
        PK12959.1 100 RKPFSDEEDKIIVAAHEIHGNK-WAAIARLLS-GRTDNAIKNHWNST 144
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.8554398IPR017930Myb domain
SuperFamilySSF466897.19E-3045141IPR009057Homeodomain-like
SMARTSM007176.2E-154796IPR001005SANT/Myb domain
PfamPF002492.9E-164893IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-2649101IPR009057Homeodomain-like
CDDcd001673.26E-145092No hitNo description
SMARTSM007174.0E-1699147IPR001005SANT/Myb domain
PROSITE profilePS5129421.2499149IPR017930Myb domain
PfamPF002491.9E-14100144IPR001005SANT/Myb domain
CDDcd001675.20E-12102145No hitNo description
Gene3DG3DSA:1.10.10.601.4E-22102148IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDTVEDSTTT AAEIDTDKLD GLGESGDDAA KAGDDDGGSG KAGRDRVKGP WSPEEDAILS  60
RLVSKFGARN WSLIARGISG RSGKSCRLRW CNQLDPAVKR KPFSDEEDKI IVAAHEIHGN  120
KWAAIARLLS GRTDNAIKNH WNSTLRRRCL ERDKVKLEPG NAVEDVSFDR TKASSEETMS  180
CGDVNSFKSM EGRDPSYVEH TVDHNEVKLA EGYLSHEALE PPTLFRPVPR VSAFSVYNTL  240
DGQQPLSSNQ RPIPMQGPLV QLAKSDVQIF KLLEAEHGGN SVPHQCGYGC CKMKNGINSE  300
NSLLGPDFVD FSEPPAISSF DLAAIATDIS NLAWLKSGLE NSSVRAMDDA AGRIISNGSQ  360
TQMERFEESR TSDHLLFEER RGNLMGMKTN VLST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-39451484107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101850.10.0transcription factor MYB1
SwissprotQ425751e-104MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A2P5EXD30.0A0A2P5EXD3_TREOI; MYB transcription factor
STRINGXP_010101850.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-102myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]