PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12847.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family TCP
Protein Properties Length: 376aa    MW: 40696.3 Da    PI: 6.7571
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12847.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.82e-34221432112
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........................ssssasecea 75 
                +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+++                          +         
  PK12847.1  22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNSIDKLAELppwhptenpatedpdhaataavavdsT--------- 112
                79**************************************************************988886665544333322222222210......... PP

        TCP  76 esssssasnsssg................kaaksaakskksqksaasalnlak 112
                            +                            ++  ++++n ++
  PK12847.1 113 ------------EmgltveqsessgynfqL----------HRQLGHEHSNADH 143
                ............122333211111222221..........2222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-3122136IPR005333Transcription factor, TCP
PROSITE profilePS5136932.5682482IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGMKGVGGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKNSID KLAELPPWHP TENPATEDPD HAATAAVAVD STEMGLTVEQ  120
SESSGYNFQL HRQLGHEHSN ADHHNGSGFI PHQHQPLDSD SIADTMKSFF PTSSATSAMN  180
NFPTYPQDII QRTANPTQDL GLSLHSFHDH GMAHHDQSSQ GGADHAPQND HHHQQHALFA  240
AGFGSSYQRM VPWGSEAGDN RGGGYDFGSQ SLAPAALLGQ GSTASFGNQR GTLQSSFSPL  300
VRAWDDHHLA MASQRSQPIH QSSSSIFGTR FVSDGLSAFC IPARIHGEDG QNDNDQGGGV  360
VSERPSSSSS PNSTHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-232982154Putative transcription factor PCF6
5zkt_B7e-232982154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024183758.11e-139transcription factor TCP4-like
TrEMBLA0A2P5E7T91e-164A0A2P5E7T9_TREOI; TCP transcription factor
STRINGXP_004303161.11e-138(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-59TCP family protein