PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12817.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 310aa    MW: 33044 Da    PI: 4.3917
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12817.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-05287309223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +C+ C+ksF++   L++H +  H
  PK12817.1 287 SCKTCSKSFNSDKALESHTKAkH 309
                6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.3403.8E-5392IPR024057Nucleoplasmin core domain
PfamPF030663.3E-83183No hitNo description
SuperFamilySSF692031.96E-5392IPR024057Nucleoplasmin core domain
PROSITE profilePS5015710.471286310IPR007087Zinc finger, C2H2
PROSITE patternPS000280288309IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEFWGVEIKA GEPLKIEPDD DMVIHLSQAV LGETKSKGSE TVYLNVKVGD QKFVLANLSL  60
DKFPQVTFDL VFDQEVELSH NWKNGSIHLC GYQAPTGPYE GDEMEEGQFM TDSSDEEEEV  120
PVTAVENGKG ATKPAAAKAA AGKRVAAPAK PEASGKAKVK VVEPSKDDEE DDSDDSDSDD  180
SDEIDSEGDS DEDMLDGDDS DDSDSDEEDD EETPVKPEVS KKRPAASPSK TPVSSKKSKA  240
AASPKSDGKK VAHVSTPHPS KKSAAKTPAT PATDKSKQTP KSAGNVSCKT CSKSFNSDKA  300
LESHTKAKHA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031877.16e-97histone deacetylase HDT1 isoform X1
TrEMBLW9R3F01e-83W9R3F0_9ROSA; Histone deacetylase HDT1
STRINGXP_010089160.12e-84(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.26e-33histone deacetylase 3