PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK12817.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | C2H2 | ||||||||
Protein Properties | Length: 310aa MW: 33044 Da PI: 4.3917 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.5e-05 | 287 | 309 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+ksF++ L++H + H PK12817.1 287 SCKTCSKSFNSDKALESHTKAkH 309 6*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.340 | 3.8E-5 | 3 | 92 | IPR024057 | Nucleoplasmin core domain |
Pfam | PF03066 | 3.3E-8 | 3 | 183 | No hit | No description |
SuperFamily | SSF69203 | 1.96E-5 | 3 | 92 | IPR024057 | Nucleoplasmin core domain |
PROSITE profile | PS50157 | 10.471 | 286 | 310 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 288 | 309 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009294 | Biological Process | DNA mediated transformation | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010162 | Biological Process | seed dormancy process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005618 | Cellular Component | cell wall | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0005774 | Cellular Component | vacuolar membrane | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MEFWGVEIKA GEPLKIEPDD DMVIHLSQAV LGETKSKGSE TVYLNVKVGD QKFVLANLSL 60 DKFPQVTFDL VFDQEVELSH NWKNGSIHLC GYQAPTGPYE GDEMEEGQFM TDSSDEEEEV 120 PVTAVENGKG ATKPAAAKAA AGKRVAAPAK PEASGKAKVK VVEPSKDDEE DDSDDSDSDD 180 SDEIDSEGDS DEDMLDGDDS DDSDSDEEDD EETPVKPEVS KKRPAASPSK TPVSSKKSKA 240 AASPKSDGKK VAHVSTPHPS KKSAAKTPAT PATDKSKQTP KSAGNVSCKT CSKSFNSDKA 300 LESHTKAKHA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024031877.1 | 6e-97 | histone deacetylase HDT1 isoform X1 | ||||
TrEMBL | W9R3F0 | 1e-83 | W9R3F0_9ROSA; Histone deacetylase HDT1 | ||||
STRING | XP_010089160.1 | 2e-84 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1025 | 30 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 6e-33 | histone deacetylase 3 |