PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK12757.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | B3 | ||||||||
Protein Properties | Length: 434aa MW: 49263.2 Da PI: 7.5394 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.7 | 2.1e-18 | 31 | 112 | 9 | 97 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + + ++ l +pkkf ++ +k + +tl+ + g +W+v + + ++++ +++ GW+eFv+++gL e+D ++Fk++g+s f v +f PK12757.1 31 SGFDRH-LAIPKKFSSSLREK--LPECVTLKGPGGGTWSVGV--TTTGDTLYFKHGWQEFVNDHGLAENDLLIFKYSGKSVF--EVLIF 112 455555.9******9888544..5556***************..*********************************99999..67666 PP | |||||||
2 | B3 | 46.5 | 6.8e-15 | 309 | 403 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 v++ps+v k+ + lp + + ++ + +++ ++ l+ r+W+ +++y++ +++ l++GW++F+ +n+L+e D++vF+ ++f l vk+fr PK12757.1 309 VVMKPSHVYKRFFVLLPTDWVMKYISLENQ--DVFLRY-GEREWRTRFNYNQLRKSAALSSGWNHFATDNNLEEYDVCVFQPGsPVnDSFCLDVKIFR 403 6899*****************999444334..566655.88****************************************54222477777888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 14.593 | 22 | 115 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-21 | 23 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.83E-17 | 24 | 113 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-21 | 24 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 7.7E-17 | 25 | 115 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.3E-15 | 34 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-16 | 305 | 403 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.88E-14 | 306 | 403 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.2E-6 | 307 | 405 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.293 | 307 | 405 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.85E-15 | 307 | 403 | No hit | No description |
Pfam | PF02362 | 8.0E-13 | 309 | 403 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MGDSCVECTK WAEEIYWTRF QDIHFSQIMA SGFDRHLAIP KKFSSSLREK LPECVTLKGP 60 GGGTWSVGVT TTGDTLYFKH GWQEFVNDHG LAENDLLIFK YSGKSVFEVL IFNGQNMCEK 120 EFSYFVKICG HKKDDHGTLS KKVSRRTSCD ETNNDSFENV ECTQVKKSRN FDGLWLQSGD 180 QVISLSNDKG GHRKSTVRRR IVSNNNDGSL VPSGEAFDFP NTDEAGMNST STRPVRTTRS 240 HNTLNEGSSP VSGELVYVSD AEHTPTKKSG PYGVQYSSNR RPVTEDEKNF ALQLAHSQIL 300 ESNSEGLIVV MKPSHVYKRF FVLLPTDWVM KYISLENQDV FLRYGEREWR TRFNYNQLRK 360 SAALSSGWNH FATDNNLEEY DVCVFQPGSP VNDSFCLDVK IFRVVEEITP LTTISSSSRK 420 YKRKLIKMDG QSIV |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010089922.1 | 1e-158 | B3 domain-containing protein REM16 | ||||
Refseq | XP_024017087.1 | 1e-158 | B3 domain-containing protein REM16 | ||||
TrEMBL | A0A2P5FMY3 | 0.0 | A0A2P5FMY3_TREOI; B3 DNA binding domain containing protein | ||||
STRING | XP_010089922.1 | 1e-158 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 6e-40 | B3 family protein |