PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12757.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 434aa    MW: 49263.2 Da    PI: 7.5394
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12757.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.72.1e-1831112997
                HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                + + ++ l +pkkf ++  +k   +  +tl+ + g +W+v +  + ++++ +++ GW+eFv+++gL e+D ++Fk++g+s f   v +f
  PK12757.1  31 SGFDRH-LAIPKKFSSSLREK--LPECVTLKGPGGGTWSVGV--TTTGDTLYFKHGWQEFVNDHGLAENDLLIFKYSGKSVF--EVLIF 112
                455555.9******9888544..5556***************..*********************************99999..67666 PP

2B346.56.8e-15309403398
                EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
         B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                 v++ps+v k+  + lp + + ++ + +++  ++ l+    r+W+ +++y++ +++  l++GW++F+ +n+L+e D++vF+      ++f l vk+fr
  PK12757.1 309 VVMKPSHVYKRFFVLLPTDWVMKYISLENQ--DVFLRY-GEREWRTRFNYNQLRKSAALSSGWNHFATDNNLEEYDVCVFQPGsPVnDSFCLDVKIFR 403
                6899*****************999444334..566655.88****************************************54222477777888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.59322115IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-2123113IPR015300DNA-binding pseudobarrel domain
CDDcd100176.83E-1724113No hitNo description
Gene3DG3DSA:2.40.330.101.3E-2124113IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.7E-1725115IPR003340B3 DNA binding domain
PfamPF023626.3E-1534113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-16305403IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-14306403IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-6307405IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293307405IPR003340B3 DNA binding domain
CDDcd100171.85E-15307403No hitNo description
PfamPF023628.0E-13309403IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MGDSCVECTK WAEEIYWTRF QDIHFSQIMA SGFDRHLAIP KKFSSSLREK LPECVTLKGP  60
GGGTWSVGVT TTGDTLYFKH GWQEFVNDHG LAENDLLIFK YSGKSVFEVL IFNGQNMCEK  120
EFSYFVKICG HKKDDHGTLS KKVSRRTSCD ETNNDSFENV ECTQVKKSRN FDGLWLQSGD  180
QVISLSNDKG GHRKSTVRRR IVSNNNDGSL VPSGEAFDFP NTDEAGMNST STRPVRTTRS  240
HNTLNEGSSP VSGELVYVSD AEHTPTKKSG PYGVQYSSNR RPVTEDEKNF ALQLAHSQIL  300
ESNSEGLIVV MKPSHVYKRF FVLLPTDWVM KYISLENQDV FLRYGEREWR TRFNYNQLRK  360
SAALSSGWNH FATDNNLEEY DVCVFQPGSP VNDSFCLDVK IFRVVEEITP LTTISSSSRK  420
YKRKLIKMDG QSIV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089922.11e-158B3 domain-containing protein REM16
RefseqXP_024017087.11e-158B3 domain-containing protein REM16
TrEMBLA0A2P5FMY30.0A0A2P5FMY3_TREOI; B3 DNA binding domain containing protein
STRINGXP_010089922.11e-158(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-40B3 family protein