PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12638.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family TALE
Protein Properties Length: 554aa    MW: 61087.9 Da    PI: 7.8997
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12638.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-093163531954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  PK12638.1 316 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 353
                664559******************************88 PP
2BELL122.81.4e-39176247172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                +r e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai  q+
  PK12638.1 176 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAILAQL 247
                589*****************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.9E-7790245IPR006563POX domain
PfamPF075266.2E-5495243IPR006563POX domain
PROSITE profilePS5007112.568294357IPR001356Homeobox domain
CDDcd000861.62E-12297358No hitNo description
SMARTSM003891.2E-9297361IPR001356Homeobox domain
SuperFamilySSF466892.31E-17298364IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-29300363IPR009057Homeodomain-like
PfamPF059202.6E-18314353IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
HHHHHHPVEG QGLSLTLSSP LDAAAKAEEL RMGNTALLYY GGGGVGGGSS SGQDHHYPYN  60
KNHNNYGNAP GGGSGLINHH QVHVGFGSSL GVVNVLRNSK YVKAAQELLE EFCSVGRGNH  120
FKKNKLFGYN NNKNNNNNST NPNPATSSGG GGGGGGGGSS SSSKDHVSAP PLSAADRIEH  180
QRRKVKLLSM LDEVDRRYNH YCEQMQMVVN SFDLVMGFGA AVPYTALAQK AMSRHFRCLK  240
DAILAQLKHS CELLGEKDGG GSSGITKGET PRLKILEQSL RQQRAFQSIG MMEQEAWRPQ  300
RGLPERSVNI LRAWLFEHFL HPYPSDADKH LLARQTGLSR NQVSNWFINA RVRLWKPMVE  360
EMYQQEAKEE ETVSSDQEIR SDHHHHQHNH DHQMIDSNTN NNRNNNIIIN NSQNSMTSGH  420
HHQMLAQTPT TTLATQTTTT DINAMESDPS LVAINNNNSN NTNNNNSSNS NSNRNIIINN  480
NNNNIHRQPF SENQAVIMQQ QQAFPTTTSS ELLAPPLVQQ SFAAAEDTCR RVSLVHNNNA  540
GDFGTTTSNN NNNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16303361563Homeobox protein Meis2
3k2a_B1e-16303361563Homeobox protein Meis2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147158SGGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025689.10.0PREDICTED: BEL1-like homeodomain protein 4
SwissprotQ9SW801e-148BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A2P5BZB10.0A0A2P5BZB1_PARAD; Knotted like homeodomain transcription factor
STRINGPOPTR_0007s12170.20.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-133BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]