PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK12634.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 355aa MW: 40008 Da PI: 4.5128

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK12634.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.8e-12	188	231	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L PK12634.1 188 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 231 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.491	182	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.37E-15	185	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-12	188	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-9	188	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.9E-15	189	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.62E-5	189	236	No hit	No description
CDD	cd04873	0.00935	281	322	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MELTQHGFLE ELLAPRRDNW SSFSSVLNDQ FYPSGWSFDS FEENPVLAIS NPPPFVGFSN 60 PTDPNNNNNN NNSECPFIEH TLYPFVNHES VVLMPELNNN DTPSFPSQDQ DYPSMVEDEE 120 FGFLGCENQS CLEENKACKV EMEQQNTELP VFNIGLCGSG AEKKTTTTIT TTTTSRPKKL 180 EGQPSKNLMA ERRRRKRLND RLSMLRSIVP KISKMDRTSI LGDTIDYMKE LLERISKLQE 240 EGMEDGNNQI NLLGISKELK PSEVLVRNSP KFDVERRDMD TRIDICCAAK PGLLLSTVNT 300 LEALGLEIQQ CVISCFNDFS MQASCSEGAQ QRTLISSEDI KQAIFRNAGY GGRCL

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MELTQHGFLE ELLAPRRDNW SSFSSVLNDQ FYPSGWSFDS FEENPVLAIS NPPPFVGFSN  60
PTDPNNNNNN NNSECPFIEH TLYPFVNHES VVLMPELNNN DTPSFPSQDQ DYPSMVEDEE  120
FGFLGCENQS CLEENKACKV EMEQQNTELP VFNIGLCGSG AEKKTTTTIT TTTTSRPKKL  180
EGQPSKNLMA ERRRRKRLND RLSMLRSIVP KISKMDRTSI LGDTIDYMKE LLERISKLQE  240
EGMEDGNNQI NLLGISKELK PSEVLVRNSP KFDVERRDMD TRIDICCAAK PGLLLSTVNT  300
LEALGLEIQQ CVISCFNDFS MQASCSEGAQ QRTLISSEDI KQAIFRNAGY GGRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	197	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890522.1	1e-168	transcription factor bHLH93-like
Swissprot	Q9LSL1	6e-91	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A2P5AR00	0.0	A0A2P5AR00_PARAD; Basic helix-loop-helix transcription factor
TrEMBL	A0A2P5FH73	0.0	A0A2P5FH73_TREOI; Basic helix-loop-helix transcription factor
STRING	EMJ06619	1e-165	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1186	34	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	9e-93	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]