PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK12427.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | BES1 | ||||||||
Protein Properties | Length: 629aa MW: 70887.5 Da PI: 5.653 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 150.6 | 1.2e-46 | 24 | 163 | 2 | 143 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq.sslks 100 ++g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGwvve DGttyr++ p + + +s+ s+l+ +slk+ PK12427.1 24 AKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVETDGTTYRHSPPPS----QLLAYPMRSVDSPLStTSLKN 119 6899*****************************************************************555554....333344444444444455777 PP DUF822 101 salaspvesysas.pksssfpspssldsislasa.......asllpvlsvl 143 s+++ ++s+ +s ++ ++++sp+slds+ +a++ + + PK12427.1 120 SSVKGTLDSQPPSaLRIDESLSPTSLDSVVIAEKetknekyS-------ST 163 777777777765527899*************99954433333.......33 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.2E-48 | 25 | 170 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 2.25E-152 | 190 | 623 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 2.4E-165 | 193 | 622 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 7.8E-80 | 215 | 587 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 7.3E-54 | 230 | 244 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 7.3E-54 | 251 | 269 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 7.3E-54 | 273 | 294 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 7.3E-54 | 366 | 388 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 7.3E-54 | 439 | 458 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 7.3E-54 | 473 | 489 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 7.3E-54 | 490 | 501 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 7.3E-54 | 508 | 531 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 7.3E-54 | 546 | 568 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 629 aa Download sequence Send to blast |
XAAATNSAGA VPSTAAAAAS SGPAKGKRER EKEKERTKLR ERHRRAITSR MLAGLRQYGN 60 FPLPARADMN DVLAALAREA GWVVETDGTT YRHSPPPSQL LAYPMRSVDS PLSTTSLKNS 120 SVKGTLDSQP PSALRIDESL SPTSLDSVVI AEKETKNEKY SSTSPINSAE CLEADQLIQD 180 FRSTNNGNDF TGTPYVPVYV ILATSTVNQF CQLVDPEGVR QELSHLQSLN VDGVVVECWW 240 GIIEGWSPQK YIWSGYRDLF NIIREFKLKL QVVMAFHEYG GSESGDTMIT LPRWVLEIGK 300 ENQDIFFTDR EGRRNTECLS WGIDKERVLH GRTGIEVYFD LMRSFRTEFD DLFSEGIICA 360 LEIGLGASGE LKYPSFPERM GWRYPGVGEF QCYDKYLLQS LRKAAKLRGH SLWARGPDNA 420 GHYNSRPHET GFFCERGDYD SYYGRFFLHW YGQMLIDHVD NVLSLASLAF EETNIIVKVP 480 AVYWWYRTPS HAAELTSGYY NPTNQDGYSP VFEVLKKYSV TVKFVCSGLH MSSQDIDEAF 540 ADPEGLCWQV FNSAWDRGLA IAGENAETCH REGHMKLVEM AKPRNDPDRR QFSFFVYRQP 600 SLVQGTMCFS ELDDLIKSMH GEIVGDLVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wdq_A | 1e-117 | 195 | 566 | 11 | 382 | Beta-amylase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00543 | DAP | Transfer from AT5G45300 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002270680.1 | 0.0 | PREDICTED: beta-amylase 8 isoform X1 | ||||
Swissprot | Q9FH80 | 0.0 | BAM8_ARATH; Beta-amylase 8 | ||||
TrEMBL | A0A0K0PUA9 | 0.0 | A0A0K0PUA9_CAMSI; Beta-amylase | ||||
STRING | EOY25398 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11902 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45300.1 | 0.0 | beta-amylase 2 |
Publications ? help Back to Top | |||
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