PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12427.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family BES1
Protein Properties Length: 629aa    MW: 70887.5 Da    PI: 5.653
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12427.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822150.61.2e-46241632143
     DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq.sslks 100
                ++g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGwvve DGttyr++  p     +  +   +s+ s+l+ +slk+
  PK12427.1  24 AKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVETDGTTYRHSPPPS----QLLAYPMRSVDSPLStTSLKN 119
                6899*****************************************************************555554....333344444444444455777 PP

     DUF822 101 salaspvesysas.pksssfpspssldsislasa.......asllpvlsvl 143
                s+++  ++s+ +s ++ ++++sp+slds+ +a++       +        +
  PK12427.1 120 SSVKGTLDSQPPSaLRIDESLSPTSLDSVVIAEKetknekyS-------ST 163
                777777777765527899*************99954433333.......33 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.2E-4825170IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.25E-152190623IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.802.4E-165193622IPR013781Glycoside hydrolase, catalytic domain
PfamPF013737.8E-80215587IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.3E-54230244IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.3E-54251269IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.3E-54273294IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.3E-54366388IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.3E-54439458IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.3E-54473489IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.3E-54490501IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.3E-54508531IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.3E-54546568IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
XAAATNSAGA VPSTAAAAAS SGPAKGKRER EKEKERTKLR ERHRRAITSR MLAGLRQYGN  60
FPLPARADMN DVLAALAREA GWVVETDGTT YRHSPPPSQL LAYPMRSVDS PLSTTSLKNS  120
SVKGTLDSQP PSALRIDESL SPTSLDSVVI AEKETKNEKY SSTSPINSAE CLEADQLIQD  180
FRSTNNGNDF TGTPYVPVYV ILATSTVNQF CQLVDPEGVR QELSHLQSLN VDGVVVECWW  240
GIIEGWSPQK YIWSGYRDLF NIIREFKLKL QVVMAFHEYG GSESGDTMIT LPRWVLEIGK  300
ENQDIFFTDR EGRRNTECLS WGIDKERVLH GRTGIEVYFD LMRSFRTEFD DLFSEGIICA  360
LEIGLGASGE LKYPSFPERM GWRYPGVGEF QCYDKYLLQS LRKAAKLRGH SLWARGPDNA  420
GHYNSRPHET GFFCERGDYD SYYGRFFLHW YGQMLIDHVD NVLSLASLAF EETNIIVKVP  480
AVYWWYRTPS HAAELTSGYY NPTNQDGYSP VFEVLKKYSV TVKFVCSGLH MSSQDIDEAF  540
ADPEGLCWQV FNSAWDRGLA IAGENAETCH REGHMKLVEM AKPRNDPDRR QFSFFVYRQP  600
SLVQGTMCFS ELDDLIKSMH GEIVGDLVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-11719556611382Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270680.10.0PREDICTED: beta-amylase 8 isoform X1
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A0K0PUA90.0A0A0K0PUA9_CAMSI; Beta-amylase
STRINGEOY253980.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119023032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]