PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12308.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 329aa    MW: 38282 Da    PI: 8.3775
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12308.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-0795155346
                      SS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqk 46 
                      +W++e   ll+ a     ++            W++Ia++++      ++R++kqck++w+k
        PK12308.1  95 KWSKEATTLLISAWLNTSKDnivgndqisrrFWDRIAKYFNtnckgeERRSGKQCKDHWNK 155
                      66666666666666666666666666777779****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10004.1E-18269IPR023214HAD-like domain
PfamPF132421.3E-14264No hitNo description
SuperFamilySSF567845.26E-17268IPR023214HAD-like domain
CDDcd014271.25E-5236No hitNo description
PROSITE profilePS500907.18988157IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.9E-589159IPR009057Homeodomain-like
CDDcd001670.0051995156No hitNo description
PfamPF138373.1E-795165No hitNo description
PfamPF143033.4E-9200295IPR029466No apical meristem-associated, C-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
XLERYNISCS RMCMVGDRLD TDILFGRNAG CKTLLVLSGV TTLPTLEDPS NTIQPDYYTS  60
QVSDIFDLMA SLASIRLEHV VLNNETEPTQ KSKLKWSKEA TTLLISAWLN TSKDNIVGND  120
QISRRFWDRI AKYFNTNCKG EERRSGKQCK DHWNKMNQKV VRFNSCYKRV QQAHHSDWSG  180
EQIIENAHEM YKSENNNSNF LLMHCWRLLK DESKWNTVYQ PQGGKRTKVS ESGEYTSSSN  240
ADISDHEVSG VRQKAAKRKE KENHEQHATF YDISERKAEA LEKLLAIEKE KTMTKYMDYL  300
LMDTSHMTLE QKKDHEKLCI HIKTNILKY