PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12273.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family AP2
Protein Properties Length: 453aa    MW: 50151.9 Da    PI: 9.0714
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12273.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.2e-1767126155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  PK12273.2  67 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 126
                57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.04E-1767135IPR016177DNA-binding domain
PfamPF008477.0E-1367126IPR001471AP2/ERF domain
SMARTSM003809.7E-2668140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-1568135IPR001471AP2/ERF domain
PROSITE profilePS5103220.12668134IPR001471AP2/ERF domain
PRINTSPR003674.7E-56980IPR001471AP2/ERF domain
PRINTSPR003674.7E-5116136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MASSSSDPGL KPESSSGGGG GETSEAVIAN DQLLLYRGLK KAKKERGCTA KERISKMPPC  60
AAGKRSSIYR GVTRHRWTGR YEAHLWDKST WNQNQNKKGK QVYLGAYDDE EAAARAYDLA  120
ALKYWGPGTL INFPVTDYAR DLEEMQNVSR EEYLASLRRC IFYVCNSIFY SLNFXAVTQG  180
NDLYRKSSGF SRGISKYRAL SSRWEPSFGR MAGSEYLSSI HYGPGDDLAT DSEFVGSLCF  240
ERKIDFTNYI KWWGPNKNRQ GEASVKSSED AKFGCVGDLG GELKPLERAV KTTEPYQMPR  300
LGVSPEGKQH KSSKVSALSI LSRSPAYKSL QEKASKKEET NAENDENKNK NTMSKLDYGK  360
AIEKSTNHDG ASDRYGAELG MSGGLSLQRN INMFPLSPLL NAPLLTNYNT IDPLVDPIIW  420
TSLAPVLPGG LSRTSEVTKT ETSSSFSLYQ QGE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027236.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-170AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2P5EN460.0A0A2P5EN46_TREOI; AP2/ERF transcription factor
STRINGXP_010105336.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.21e-158AP2 family protein