PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK12273.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | AP2 | ||||||||
Protein Properties | Length: 428aa MW: 47248.6 Da PI: 9.185 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.9e-17 | 68 | 127 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g PK12273.1 68 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 127 57*******************766644468557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.58E-17 | 68 | 136 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.5E-13 | 68 | 127 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.126 | 69 | 135 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.7E-26 | 69 | 141 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-15 | 69 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-5 | 70 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-5 | 117 | 137 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MASSSSDPGL KPESSSGXGG GGETSEAVIA NDQLLLYRGL KKAKKERGCT AKERISKMPP 60 CAAGKRSSIY RGVTRHRWTG RYEAHLWDKS TWNQNQNKKG KQVYLGAYDD EEAAARAYDL 120 AALKYWGPGT LINFPVTDYA RDLEEMQNVS REEYLASLRR KSSGFSRGIS KYRALSSRWE 180 PSFGRMAGSE YLSSIHYGPG DDLATDSEFV GSLCFERKID FTNYIKWWGP NKNRQGEASV 240 KSSEDAKFGC VGDLGGELKP LEWAVKTTEP YQMPRLGVSP EGKQHKSSKV SALSILSRSP 300 AYKSLQEKAS KKEETNAEND ENKNKNTMSK LDYGKAIEKS TNHDGASDRY GAELGMSGGL 360 SLQRNINMFP LSPLLNAPLL TNYNTIDPLV DPIIWTSLAP VLPGGLSRTS EVTKTETSSS 420 FSLYQQGE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024027236.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 isoform X1 | ||||
Swissprot | Q8GWK2 | 1e-174 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A2P5EN46 | 0.0 | A0A2P5EN46_TREOI; AP2/ERF transcription factor | ||||
STRING | XP_010105336.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6007 | 29 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-164 | AP2 family protein |