PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12143.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family CPP
Protein Properties Length: 529aa    MW: 57331.4 Da    PI: 7.4856
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12143.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.23.9e-144281242
        TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
               ++k+CnC++s+Clk+YCeCfa+g +C+  C+C +C N+ e+
  PK12143.1 42 KQKQCNCRHSRCLKLYCECFASGIYCDG-CNCVNCYNNVEN 81
               89**************************.********9875 PP
2TCR51.12.7e-16126165140
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  PK12143.1 126 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 165
                589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.9E-164181IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.90342166IPR005172CRC domain
PfamPF036385.0E-114378IPR005172CRC domain
SMARTSM011148.4E-20126167IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.9E-13129164IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
XPPVVTGPVM PQPSVPSARI VKPDSPKSRS RPNEVKDGTP KKQKQCNCRH SRCLKLYCEC  60
FASGIYCDGC NCVNCYNNVE NEAARREAVE ATLERNPNAF RPKIASSPHG VRDNREDAGE  120
IMILGKHNKG CHCKKSGCLK KYCECFQANI LCSENCKCMD CKNFEGSEER QALFHGDHGS  180
NMAYIQQAAN AAITGAIGSS GYTSPPVSKK RKGQELFFGP TVTPKDTSVN RIGQFQQVNH  240
HRAPVPPSLP SVPAARLGSA TGVGPSKFTY RSLLADIIQP QDLKELCSVL VVVSGEAAKT  300
LAEQRSATEK RTEDQSETSL ASTTQDRLQN QKESDLEKSV DDCSSANQAD KTGADDSSSD  360
GADLPKGRPM SPDTLALMCD EQDTMFMAPA SPSGTGHGCN ISSQLPYEQG MPELYAEQER  420
LVLSRFRDCL KMVIALGEIK ETKYSSLAQS EPESHKDTLT NIGITNHKTE ISYHSGPAKN  480
GVLKTIVPPT TKTTQTISTA VAAVSNELPK IPQFPENGGI ANPKIEKEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-32341752132Protein lin-54 homolog
5fd3_B4e-32341752132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898233.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2P5FSX70.0A0A2P5FSX7_TREOI; Lin-54-like protein
STRINGXP_010105053.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-165Tesmin/TSO1-like CXC domain-containing protein