PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK12098.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 448aa MW: 49720.5 Da PI: 7.5589

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK12098.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.9	0.00021	323	355	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +A++YIk Lq PK12098.1 323 DRITALQQIVSPF-----GKTDTASVLYEAIQYIKFLQ 355 6788888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.194	305	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-10	320	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-8	320	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.97E-4	323	359	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
XGMYEPLACD YLKKLDTNTN SAKYSNSWDD HNNHFSSSNN NNNFDDQKSN SSIMMMINTS 60 STTATTPSTA LINESMVENE RLTNKLSNLI STWSIAPPDP LEININTTTT TNNNNNNHYF 120 NPDDQTCNIS LSSNSIMEDH HFPPCNYLLP SLKLENHSGH GGGDEMDEAR PFNNNIMGYN 180 NNNGSFMTSA GHYGMPGPGP GLGPGSMDSY SSCASNVKNF ADVISFGGRL GKPFMDLHGS 240 NNNNIKPCIN KSLGLSDSKK QGLQTSTPTK GSGRGQGNTS SEGKKKRSDN QDNNSETSLK 300 KPKQENSTAS SAKIQVPKVK LGDRITALQQ IVSPFGKTDT ASVLYEAIQY IKFLQEQVKL 360 LSNPYMKTNS HKDAWGSLDR NIKDHHHHHQ NQQNNQMMMV MKGDHHHHHQ NHQNNHHVKL 420 DLRSRGLCLV PLSCTPQVYR DNTGSDYW

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

XGMYEPLACD YLKKLDTNTN SAKYSNSWDD HNNHFSSSNN NNNFDDQKSN SSIMMMINTS  60
STTATTPSTA LINESMVENE RLTNKLSNLI STWSIAPPDP LEININTTTT TNNNNNNHYF  120
NPDDQTCNIS LSSNSIMEDH HFPPCNYLLP SLKLENHSGH GGGDEMDEAR PFNNNIMGYN  180
NNNGSFMTSA GHYGMPGPGP GLGPGSMDSY SSCASNVKNF ADVISFGGRL GKPFMDLHGS  240
NNNNIKPCIN KSLGLSDSKK QGLQTSTPTK GSGRGQGNTS SEGKKKRSDN QDNNSETSLK  300
KPKQENSTAS SAKIQVPKVK LGDRITALQQ IVSPFGKTDT ASVLYEAIQY IKFLQEQVKL  360
LSNPYMKTNS HKDAWGSLDR NIKDHHHHHQ NQQNNQMMMV MKGDHHHHHQ NHQNNHHVKL  420
DLRSRGLCLV PLSCTPQVYR DNTGSDYW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019427.1	1e-124	transcription factor mef2A
TrEMBL	A0A2P5A7K6	1e-177	A0A2P5A7K6_TREOI; Myc-type, basic helix-loop-helix (BHLH) domain containing protein
STRING	XP_010093361.1	1e-110	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10116	26	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	4e-44	bHLH family protein