PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12073.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 560aa    MW: 61729.6 Da    PI: 7.2948
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12073.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.58.6e-17366412455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  PK12073.1 366 VHNLSERRRRDRINEKMKALQELIPHS-----NKTDKASMLDEAIEYLKSLQ 412
                6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-20359426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-20360419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.254362411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.59E-18365416No hitNo description
PfamPF000103.5E-14366412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-18368417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MNNIPDWNFD CDLPVNGQKN PNGADHDLVE LLWRNGQVVL QSQTHRKASV GANESRQVQK  60
HDQQAIRNGG PYGNSMNMVQ DDDAVPWIHY PLEDAFEKDF CSNFFSELSS CDPIEIDKPI  120
RHVDEERLLS KFGGSDTTHV PSNSQHQNHQ KLKPSSNGVV PCPENHNMPP PRHNYSNSSV  180
HQKQNLGSLG KVVNFSQFSA MGKCDMRPQQ QQQAVKEPGN RGEVRECSAM TVGLSHCGSN  240
QLAAADLDVS WVSSNNGDGN NGLSAGAFKD DVQKILPRTR TSESGKAETL EPTLTSSSGG  300
SGSSFGRTCK QSTATTSANN NNNNKRKNRD AEELECQSDA AEHESAAANK SSQRSGSSRK  360
SRAAEVHNLS ERRRRDRINE KMKALQELIP HSNKTDKASM LDEAIEYLKS LQLQLQVMWM  420
GSGMAPMMFP GVQHYMSRLG MAMGPPSLPS IHNPMHLPRV PVVDQSMIGP QTTDQSVLCQ  480
TPAFNPINYQ NQMQNASFQE QYARYMGFHP MQTVSQPMNL FRFNPQTLQQ TQSIAQQQGI  540
STAPSNSGIP TNGALTGKMG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370375ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093193.20.0transcription factor PIF4 isoform X1
RefseqXP_024019248.10.0transcription factor PIF4 isoform X2
TrEMBLA0A2P5EVY10.0A0A2P5EVY1_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010093193.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.42e-36phytochrome interacting factor 3-like 6