PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12054.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 483aa    MW: 55620.6 Da    PI: 8.4053
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12054.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.46e-1415100697
                ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                + + +l+++ l +p  f+++hg+       + ++ + g +W+++l   k +++++l+kGW++F+k   +k+g ++ Fk++g+sef  +v ++
  PK12054.1  15 VDEETLQNSKLLIPDIFTRKHGEA--LFDWVLVKPPCGSKWKMEL--AKEDNHIWLEKGWSNFAKHYAIKSGFVINFKYEGNSEF--NVAIY 100
                4677889999***********844..555677777**********..**********************************9999..77666 PP
2B349.11e-15211319198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS............-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg............rsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86 
                ffkv ++++++++  l lp +fa+ +++++ ++ t+ l+ + g            ++W+v+++++ + g    ++++GW  Fv++n+Lk+gD++vF l +
  PK12054.1 211 FFKVIMQEYYGQQ--LNLPVEFATGNDYQP-CDDTIPLQISYGdgmnsspwhagyKTWDVEYKFEVYNGVptPTFQAGWPAFVQDNNLKVGDVCVFVLLR 307
                8999999999976..9**********9885.88899999998899*******************6666666699***********************998 PP

                SSEE..EEEEE- CS
         B3  87 rsefelvvkvfr 98 
                ++   ++v +fr
  PK12054.1 308 EMYIAFNVLIFR 319
                877778888887 PP
3B350.82.9e-163894761098
                HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ++ + l++p  fa+++ ++  e++ + l+d++  s +++++ +++s++  v+++GWk+F k+n L++ D+++F++ + s   ++v+++r
  PK12054.1 389 LGSGRSLTIPLYFAKDYLKN--EGIVILLTDRRYCSVQFEIKNKNNSKMrAVFSGGWKDFTKDNYLQVSDVCIFEFLKGSANVFKVTIHR 476
                4555779**********755..7889***************885555555*************************776566656887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.22E-1510102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.30810103IPR003340B3 DNA binding domain
CDDcd100171.30E-910101No hitNo description
Gene3DG3DSA:2.40.330.103.6E-1710101IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-911103IPR003340B3 DNA binding domain
PfamPF023622.7E-1116100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-16207319IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-14209320IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-5211321IPR003340B3 DNA binding domain
CDDcd100179.40E-13211319No hitNo description
PfamPF023626.5E-11211319IPR003340B3 DNA binding domain
PROSITE profilePS5086310.56263321IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-19373477IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-19375476IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-14378476No hitNo description
SMARTSM010194.8E-12379478IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041380478IPR003340B3 DNA binding domain
PfamPF023624.0E-14387476IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MFRGTLGAGH FLKIVDEETL QNSKLLIPDI FTRKHGEALF DWVLVKPPCG SKWKMELAKE  60
DNHIWLEKGW SNFAKHYAIK SGFVINFKYE GNSEFNVAIY DLSLFEIDYP SVPISLVGSN  120
IGDDSVEKSS MPSSRPQKKM RTMPTANFQS NPPGQNLESE TEGENNSRFQ KLPATTRKER  180
YEIFKRMKIM SEYEEAKALK LISDFKTTRP FFKVIMQEYY GQQLNLPVEF ATGNDYQPCD  240
DTIPLQISYG DGMNSSPWHA GYKTWDVEYK FEVYNGVPTP TFQAGWPAFV QDNNLKVGDV  300
CVFVLLREMY IAFNVLIFRV GTNFFKSLEP KEYCMVGGRT FLVRNRGKFS EDSSCPNQQV  360
FIEKSRLIER ALFKSKNHFF PVVIEPSLLG SGRSLTIPLY FAKDYLKNEG IVILLTDRRY  420
CSVQFEIKNK NNSKMRAVFS GGWKDFTKDN YLQVSDVCIF EFLKGSANVF KVTIHRAYEY  480
ASD
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-30B3 family protein