PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12011.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 1026aa    MW: 112926 Da    PI: 5.6708
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12011.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-183379148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
        PK12011.1 33 KGQWTPEEDETLRRAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 79
                     799****************************9.************986 PP
2Myb_DNA-binding63.34.6e-2085131148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEd+ +v++vkq+G++ W+tIa++++ gR +kqc++rw+++l
        PK12011.1  85 KGPWSKEEDDVIVELVKQYGPKKWSTIANHLP-GRIGKQCRERWHNHL 131
                      79******************************.*************97 PP
3Myb_DNA-binding48.51.9e-15137179145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gRt++++k++w+
        PK12011.1 137 KEAWTQEEELALIRAHQVYGNK-WAELTKFLP-GRTDNSIKNHWN 179
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.6032879IPR017930Myb domain
SuperFamilySSF466896.96E-193194IPR009057Homeodomain-like
SMARTSM007173.9E-153281IPR001005SANT/Myb domain
PfamPF002494.6E-163379IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-233595IPR009057Homeodomain-like
CDDcd001675.88E-143679No hitNo description
PROSITE profilePS5129432.70280135IPR017930Myb domain
SuperFamilySSF466893.52E-3182178IPR009057Homeodomain-like
SMARTSM007172.3E-1884133IPR001005SANT/Myb domain
PfamPF002498.4E-1885131IPR001005SANT/Myb domain
CDDcd001674.34E-1687131No hitNo description
Gene3DG3DSA:1.10.10.605.7E-2796139IPR009057Homeodomain-like
PROSITE profilePS5129419.557136186IPR017930Myb domain
SMARTSM007178.2E-15136184IPR001005SANT/Myb domain
PfamPF002491.3E-13137180IPR001005SANT/Myb domain
CDDcd001671.55E-11139179No hitNo description
Gene3DG3DSA:1.10.10.602.3E-21140186IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1026 aa     Download sequence    Send to blast
MDNDRRISGL GDNIQKNRAL NGRTSGPTRR STKGQWTPEE DETLRRAVQR FKGKNWKKIA  60
ECFKDRTDVQ CLHRWQKVLN PELVKGPWSK EEDDVIVELV KQYGPKKWST IANHLPGRIG  120
KQCRERWHNH LNPAINKEAW TQEEELALIR AHQVYGNKWA ELTKFLPGRT DNSIKNHWNS  180
SVKKKLDSYL KSGLLTQFQG LPQVGQQSQP IGSSSLKISG DDSSCRGTEA EEVSECSQDS  240
TVAGRFQTAG EMANVVLNTR EELQTTEVTG SGNLPISSPA SCSEPYYPSL EDSAFSRAEI  300
SHDIDCGAKY LRQNFSNDAE VSMGGDYHFD LHDMSNISSR HLERESSEMQ TYCLGASESN  360
EVANVSLEIS GGLIVSASMG NMHTGSEKPE HMLISDDECC RVLFSEAMND ECFSSRNLEG  420
GGSGSVLHQS SKIQMSDAGG SVPSQVPGHS SADVTGISCS QNFFSDPVSV DDGRLVFGSD  480
SNSLLIVPEQ EYATCSRDGF IYTNDSANSP CNDNMDMSRM QEQLNTSKDP SKLVPVNSFG  540
SKSDTQTCPT VSRPKVDKGE QDAGVLCYEP PRFPNFDGPF FSCDLIQSGS EMQQEYSPLG  600
IRQLMMPSNC LTPFRLWDSP TRDGSPDAVL KSAAKTFTGT PSIFKKRHRE FMSPLSDRKK  660
DKKLENDMTS SLTKNYSRLD IAVHDNRGNK ASLQSPSPNQ NENVKEPSEY TESLARTSGQ  720
DSEKVGNNMA FSHDRNTGNV FCDSELHKNT DQEASEIEDK TKIDADSSSQ LPSGVLTEHN  780
MNDLLLFSPK QVDFKARTPR NQHLKSFDPS PNRGLSSISS GIVSAPFCSP SLSGKKLKIQ  840
AIAGTCGQHD SSSTLPEMNV STAGSNVTVE TFSIFGDTPF KRSIESPSAW KSPWFINSFI  900
AGPRVDTDIS IEDMGYFVSP VERSYDAIGL MKQVSEHTAT AYANAQEVLG NDTPESLMKG  960
KLNRDTWGKS SQLGIRSTLP QNILAECRVL DFSECGTPGK KADPGKSSTG IANFSSPSSY  1020
LLKNCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-68331866159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-68331866159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1656663DRKKDKKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100271.10.0transcription factor MYB3R-1
RefseqXP_024023842.10.0transcription factor MYB3R-1
TrEMBLW9RKD70.0W9RKD7_9ROSA; Myb-related protein 3R-1
STRINGXP_010100271.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein