PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK11714.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 122aa MW: 13518 Da PI: 10.4114 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.6 | 6.7e-14 | 61 | 105 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky PK11714.1 61 PWTEEEHRTFLIGLEKLGKGDWRGISRSFVTTRTPTQVASHAQKY 105 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.804 | 54 | 110 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.84E-18 | 55 | 110 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-18 | 57 | 109 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 58 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-9 | 58 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.90E-8 | 61 | 106 | No hit | No description |
Pfam | PF00249 | 1.9E-11 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 122 aa Download sequence Send to blast |
MDCLMHSSLS SPSSSPSSSS SAIIALDETN ISDHHKAATS IGYLSDGLII GRPQERKKGV 60 PWTEEEHRTF LIGLEKLGKG DWRGISRSFV TTRTPTQVAS HAQKYFLRQA TLDKKKRRSS 120 LX |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 113 | 117 | KKKRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018845997.1 | 9e-50 | PREDICTED: myb-like protein J | ||||
Swissprot | Q9FKF9 | 6e-37 | M5162_ARATH; Probable transcription factor At5g61620 | ||||
TrEMBL | A0A2P5BNR2 | 7e-53 | A0A2P5BNR2_PARAD; GAMYB transcription factor | ||||
STRING | EMJ03412 | 4e-47 | (Prunus persica) | ||||
STRING | XP_004287537.1 | 5e-47 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3213 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56840.1 | 5e-39 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|