PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK11710.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 200aa    MW: 21897.5 Da    PI: 10.5348
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK11710.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-073282047
                     TTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqky 47
                     G ++Wk+I + +g ++t+ q++s+ qky
        PK11710.1  3 G-RDWKKIEAFVG-TKTAVQIRSHAQKY 28
                     5.45*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.644133IPR017930Myb domain
SuperFamilySSF466893.51E-6231IPR009057Homeodomain-like
PfamPF002491.2E-5228IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.1E-7231IPR006447Myb domain, plants
CDDcd001670.0012429No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
XFGRDWKKIE AFVGTKTAVQ IRSHAQKYFE KVLKSGKKEL VPPPRPKKKS AHPYPHKSPK  60
DAPNVAQVNG ATNVIQSTGA SNFTHANGFP TVTHLTGPPT VTHFTRAPTF TNVNGDPAKS  120
HCKWIPTVTH VVRYSNVTHD TGPFRSSAAL YEPAYRPHSS SVVVNPITGA SFPPWRSSSA  180
PPVSLPQLET DVEWLSIPEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.13e-26MYB_related family protein